Gene detail

Detail information of GWHGAAZE021123

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEQ37175.1	2.0509E-168	xyloglucan endotransglucosylase/hydrolase [Diospyros kaki]
COG	YP_004641534.1	1E-14	beta-glucanase
Swissprot	tr\|P35694\|XTH2_SOYBN	8E-162	Xyloglucan endotransglucosylase/hydrolase 2 {ECO:0000250\|UniProtKB:Q38857} (Precursor)
trEMBL	tr\|G5DAC6\|G5DAC6_DIOKA	8E-169	Xyloglucan endotransglucosylase/hydrolase {ECO:0000256\|RuleBase:RU361120}
TAIR10	AT4G14130.1	3E-118	xyloglucan endotransglucosylase/hydrolase 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	35433227	35436114	+
GWHAAZE00000006	mRNA	35433227	35436114	+
GWHAAZE00000006	exon	35433227	35433502	+
GWHAAZE00000006	exon	35434790	35434983	+
GWHAAZE00000006	exon	35435745	35436114	+
GWHAAZE00000006	CDS	35433227	35433502	+
GWHAAZE00000006	CDS	35434790	35434983	+
GWHAAZE00000006	CDS	35435745	35436114	+

Transcript Sequence
>GWHTAAZE021147 ATGGGAGGATTCAAATTGCTTGTGTTGGTTAGTAGTGTTCTAATGGTGAGCTCTTTGGTAATGGTTGCTAGTGCTGGTAACTTCTACCAAGACTTTGACCTAACGTGGGGCGATCGCCGCGCCAATATATTCAATGGTGGCAATCTTCTCTCCCTTTCTCTCGACAAAACCTCCGGCTCTGGCTTCAGGTCCAAGAGAGAGTATCTGTTCGGAAGGATTGACATGCAGCTAAAGCTTGTTGCCGGCAACTCTGCCGGCACTGTCACTGCTTACTATCTGTCTTCTCAAGGACCTACTCATGATGAGATAGATTTTGAGTTCTTGGGAAATACTAGTGGGGACCCTTATATTGTGCACACCAATGTGTTCACTCAAGGAAAAGGAGACAGAGAGCAACAATTTTATCTCTGGTTTGACCCTACCAGAAATTTCCACACTTACTCAGTCAGTTGGAATCCCCAACAAATCATTTTTTTGGTGGACAACACTCCCATAAGAGTATTCGACAATGCCGAAAAAGTTGGAGTTCCATTCCCTAAAAACCAACCAATGAGGATCTACTCCAGCCTCTGGAATGCTGATGATTGGGCCACGCGTGGCGGTTTAGTCAAAACCGATTGGACAAAGGCTCCCTTCACCGCGTATTATCGTAACTTCAATGTCCAGAGCTTTAGCTCGAAGTCCTCAGAGGCAGAGTGGCGGAGCCAAAAACTTGATGCCTATAGTAGAAGGAGACTCCGATGGGTTCAAAAGAATTTCATGATTTACAACTATTGCTCTGATCATAAAAGGTTCCCTCATGGCCTTCCTGTCGAGTGTAAACCATCAAAGTATCTCTAG

Network for GWHGAAZE021123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.22	Glyco_hydro_16	29	209	9.40E-62
PF06955.13	XET_C	229	273	9.90E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0010411	biological_process	xyloglucan metabolic process
GO:0042546	biological_process	cell wall biogenesis
GO:0006073	biological_process	cellular glucan metabolic process
GO:0005618	cellular_component	cell wall
GO:0048046	cellular_component	apoplast
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016762	molecular_function	xyloglucan:xyloglucosyl transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.442
	SRR3591706	second leaf	14.944
	SRR3591707	mature leaf	2.880
	SRR3591708	Shoot apex	17.715
	SRR3591709	Stem	89.596
	SRR3591710	White floral bud	81.542
	SRR3591711	White flower	160.322
	SRR3591712	Green floral bud	22.656
	SRR3591713	Yellow flower	42.305
SRP173429	SRR8316895	Juvenile bud stage	13.336
	SRR8316896	Juvenile bud stage	11.900
	SRR8316897	Juvenile bud stage	5.154
	SRR8316894	Third green stage	3.489
	SRR8316900	Third green stage	6.325
	SRR8316901	Third green stage	12.344
	SRR8316898	Complete white stage	15.465
	SRR8316899	Complete white stage	6.458
	SRR8316903	Complete white stage	23.673
	SRR8316902	Silver flowering stage	56.988
	SRR8316904	Silver flowering stage	21.177
	SRR8316905	Silver flowering stage	2.051
	SRR8316906	Gold flowering stage	2.346
	SRR8316907	Gold flowering stage	6.682
	SRR8316908	Gold flowering stage	16.672
SRP132670	SRR6706286	Control	14.094
	SRR6706287	Light intensity 50%	12.570
	SRR6706288	Light intensity 20%	11.950
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.026
	CNS0095593	Slightly white alabastrum(diploid) 2	11.505
	CNS0095594	Slightly white alabastrum(diploid) 3	19.431
	CNS0095595	Whole white alabastrum(diploid) 2	9.102
	CNS0095596	Whole white alabastrum(diploid) 3	6.712
	CNS0095597	Whole white alabastrum(diploid) 4	7.622
	CNS0095598	Silvery flower (diploied) 1	8.882
	CNS0095599	Silvery flower (diploied) 2	5.166
	CNS0095600	Silvery flower (diploied) 3	22.870
	CNS0095601	Golden flower (diploid) 1	1.284
	CNS0095602	Golden flower (diploid) 2	25.994
	CNS0095603	Golden flower (diploid) 3	20.514
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.276
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.004
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.416
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.331
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.639
	CNS0095610	Silvery flower (tetraploid) 1	41.633
	CNS0095611	Silvery flower (tetraploid) 2	19.646
	CNS0095612	Silvery flower (tetraploid) 3	13.510
	CNS0095613	Golden flower (tetraploid) 1	14.504
	CNS0095614	Golden flower (tetraploid) 2	10.201
	CNS0095615	Golden flower (tetraploid) 3	9.006
CRA001975	CRR073297	Stem 1	10.404
	CRR073298	Stem 2	8.387
	CRR073299	Stem 3	24.588
	CRR073300	Leaf 1	5.921
	CRR073301	Leaf 2	7.133
	CRR073302	Leaf 3	10.011
	CRR073303	Juvenile bud 1	6.222
	CRR073304	Juvenile bud 2	2.823
	CRR073305	Juvenile bud 3	9.183
	CRR073306	Third green 1	27.775
	CRR073307	Third green 2	48.852
	CRR073308	Third green 3	38.217
	CRR073309	Second white 1	1.237
	CRR073310	Second white 2	3.449
	CRR073311	Second white 3	1.898
	CRR073312	Silver flowering 1	1.263
	CRR073313	Silver flowering 2	0.153
	CRR073314	Silver flowering 3	0.391
	CRR073315	Gold flowering 1	331.871
	CRR073316	Gold flowering 2	410.611
	CRR073317	Gold flowering 3	203.754
	CRR073318	Tawny withering 1	99.658
	CRR073319	Tawny withering 2	34.782
	CRR073320	Tawny withering 3	149.433