Detail information of GWHGAAZE021142


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010650412.10PREDICTED: fanconi-associated nuclease 1 homolog isoform X1 [Vitis vinifera]
COGYP_007510432.12E-11conserved hypothetical protein
Swissprottr|Q5XVJ4|FAN1_ARATH0Fanconi-associated nuclease 1 homolog
trEMBLtr|A0A061EJ21|A0A061EJ21_THECC0Zinc ion binding,nucleic acid binding,hydrolases, putative isoform 1 {ECO:0000313|EMBL:EOY05020.1}
TAIR10AT1G48360.20zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3581175435823196-
GWHAAZE00000006mRNA3581175435823196-
GWHAAZE00000006exon3581175435812200-
GWHAAZE00000006exon3581301435813250-
GWHAAZE00000006exon3581403735814310-
GWHAAZE00000006exon3581538535815611-
GWHAAZE00000006exon3581568335815823-
GWHAAZE00000006exon3581615835816245-
GWHAAZE00000006exon3581633035816400-
GWHAAZE00000006exon3581755735817675-
GWHAAZE00000006exon3581778535817859-
GWHAAZE00000006exon3582081435820876-
GWHAAZE00000006exon3582096235821226-
GWHAAZE00000006exon3582138335821487-
GWHAAZE00000006exon3582180135822147-
GWHAAZE00000006exon3582285135823019-
GWHAAZE00000006exon3582316435823196-
GWHAAZE00000006CDS3582316435823196-
GWHAAZE00000006CDS3582285135823019-
GWHAAZE00000006CDS3582180135822147-
GWHAAZE00000006CDS3582138335821487-
GWHAAZE00000006CDS3582096235821226-
GWHAAZE00000006CDS3582081435820876-
GWHAAZE00000006CDS3581778535817859-
GWHAAZE00000006CDS3581755735817675-
GWHAAZE00000006CDS3581633035816400-
GWHAAZE00000006CDS3581615835816245-
GWHAAZE00000006CDS3581568335815823-
GWHAAZE00000006CDS3581538535815611-
GWHAAZE00000006CDS3581403735814310-
GWHAAZE00000006CDS3581301435813250-
GWHAAZE00000006CDS3581175435812200-
Transcript Sequence

Network for GWHGAAZE021142

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08774.12VRR_NUC7658808.10E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15363FAN1, MTMR15 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0003677molecular_functionDNA binding
GO:0003676molecular_functionnucleic acid binding
GO:0004518molecular_functionnuclease activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.966
SRR3591706second leaf1.094
SRR3591707mature leaf1.322
SRR3591708Shoot apex2.834
SRR3591709Stem1.613
SRR3591710White floral bud2.936
SRR3591711White flower3.509
SRR3591712Green floral bud3.768
SRR3591713Yellow flower3.599
SRP173429 SRR8316895Juvenile bud stage 2.419
SRR8316896Juvenile bud stage 3.939
SRR8316897Juvenile bud stage 0.770
SRR8316894Third green stage 1.355
SRR8316900Third green stage 2.989
SRR8316901Third green stage 3.053
SRR8316898Complete white stage 0.917
SRR8316899Complete white stage 3.906
SRR8316903Complete white stage 1.623
SRR8316902Silver flowering stage0.948
SRR8316904Silver flowering stage1.127
SRR8316905Silver flowering stage0.630
SRR8316906Gold flowering stage 2.222
SRR8316907Gold flowering stage 1.823
SRR8316908Gold flowering stage 1.422
SRP132670SRR6706286Control3.602
SRR6706287Light intensity 50%3.344
SRR6706288Light intensity 20%3.556
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.909
CNS0095593Slightly white alabastrum(diploid) 22.651
CNS0095594Slightly white alabastrum(diploid) 31.779
CNS0095595Whole white alabastrum(diploid) 22.200
CNS0095596Whole white alabastrum(diploid) 32.581
CNS0095597Whole white alabastrum(diploid) 42.444
CNS0095598Silvery flower (diploied) 12.983
CNS0095599Silvery flower (diploied) 21.572
CNS0095600Silvery flower (diploied) 32.881
CNS0095601Golden flower (diploid) 11.349
CNS0095602Golden flower (diploid) 22.653
CNS0095603Golden flower (diploid) 32.583
CNS0095604Slightly white alabastrum(tetraploid) 11.118
CNS0095605Slightly white alabastrum(tetraploid) 21.094
CNS0095606Slightly white alabastrum(tetraploid) 31.471
CNS0095607Whole white alabastrum(tetraploid) 11.215
CNS0095608Whole white alabastrum(tetraploid) 21.033
CNS0095609Whole white alabastrum(tetraploid) 31.411
CNS0095610Silvery flower (tetraploid) 11.595
CNS0095611Silvery flower (tetraploid) 21.226
CNS0095612Silvery flower (tetraploid) 31.363
CNS0095613Golden flower (tetraploid) 10.746
CNS0095614Golden flower (tetraploid) 21.566
CNS0095615Golden flower (tetraploid) 30.558
CRA001975CRR073297Stem 12.664
CRR073298Stem 23.039
CRR073299Stem 33.125
CRR073300Leaf 13.860
CRR073301Leaf 23.148
CRR073302Leaf 32.050
CRR073303Juvenile bud 12.943
CRR073304Juvenile bud 21.501
CRR073305Juvenile bud 33.073
CRR073306Third green 10.308
CRR073307Third green 20.601
CRR073308Third green 30.461
CRR073309Second white 10.738
CRR073310Second white 21.002
CRR073311Second white 30.954
CRR073312Silver flowering 10.989
CRR073313Silver flowering 20.749
CRR073314Silver flowering 31.433
CRR073315Gold flowering 11.070
CRR073316Gold flowering 21.806
CRR073317Gold flowering 31.194
CRR073318Tawny withering 11.812
CRR073319Tawny withering 22.288
CRR073320Tawny withering 32.225