Detail information of GWHGAAZE021168


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009373568.10PREDICTED: selenium-binding protein 2 [Pyrus x bretschneideri]
COGYP_007092268.10selenium-binding protein
Swissprottr|O23264|SEBP1_ARATH0Selenium-binding protein 1
trEMBLtr|B9GFI5|B9GFI5_POPTR0Selenium binding family protein {ECO:0000313|EMBL:EEE83477.2}
TAIR10AT4G14030.20selenium-binding protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3676519636771741-
GWHAAZE00000006mRNA3676519636771741-
GWHAAZE00000006exon3677165936771741-
GWHAAZE00000006exon3677047036770525-
GWHAAZE00000006exon3677014436770339-
GWHAAZE00000006exon3676905736769284-
GWHAAZE00000006exon3676796336768194-
GWHAAZE00000006exon3676705436767161-
GWHAAZE00000006exon3676668836766960-
GWHAAZE00000006exon3676519636765641-
GWHAAZE00000006CDS3677165936771741-
GWHAAZE00000006CDS3677047036770525-
GWHAAZE00000006CDS3677014436770339-
GWHAAZE00000006CDS3676905736769284-
GWHAAZE00000006CDS3676796336768194-
GWHAAZE00000006CDS3676705436767161-
GWHAAZE00000006CDS3676668836766960-
GWHAAZE00000006CDS3676536036765641-
GWHAAZE00000006three_prime_UTR3676519636765359-
Transcript Sequence

Network for GWHGAAZE021168

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05694.12SBP56454853.70E-203
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K17285SELENBP1 Metabolic pathways map01100
Sulfur metabolismmap00920

Gene Ontology

GO term OntologyName
GO:0008430molecular_functionselenium binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf141.226
SRR3591706second leaf98.928
SRR3591707mature leaf60.400
SRR3591708Shoot apex131.977
SRR3591709Stem86.761
SRR3591710White floral bud84.364
SRR3591711White flower139.961
SRR3591712Green floral bud99.533
SRR3591713Yellow flower184.755
SRP173429 SRR8316895Juvenile bud stage 46.689
SRR8316896Juvenile bud stage 84.901
SRR8316897Juvenile bud stage 30.563
SRR8316894Third green stage 27.810
SRR8316900Third green stage 100.103
SRR8316901Third green stage 95.561
SRR8316898Complete white stage 33.249
SRR8316899Complete white stage 107.788
SRR8316903Complete white stage 48.151
SRR8316902Silver flowering stage25.478
SRR8316904Silver flowering stage34.077
SRR8316905Silver flowering stage22.385
SRR8316906Gold flowering stage 97.652
SRR8316907Gold flowering stage 105.919
SRR8316908Gold flowering stage 111.949
SRP132670SRR6706286Control114.399
SRR6706287Light intensity 50%91.830
SRR6706288Light intensity 20%95.394
CNP0000432CNS0095592Slightly white alabastrum(diploid) 190.766
CNS0095593Slightly white alabastrum(diploid) 264.255
CNS0095594Slightly white alabastrum(diploid) 381.762
CNS0095595Whole white alabastrum(diploid) 263.727
CNS0095596Whole white alabastrum(diploid) 366.066
CNS0095597Whole white alabastrum(diploid) 463.304
CNS0095598Silvery flower (diploied) 1136.725
CNS0095599Silvery flower (diploied) 2120.951
CNS0095600Silvery flower (diploied) 3172.285
CNS0095601Golden flower (diploid) 1113.082
CNS0095602Golden flower (diploid) 2172.992
CNS0095603Golden flower (diploid) 3172.434
CNS0095604Slightly white alabastrum(tetraploid) 172.770
CNS0095605Slightly white alabastrum(tetraploid) 276.043
CNS0095606Slightly white alabastrum(tetraploid) 372.672
CNS0095607Whole white alabastrum(tetraploid) 157.467
CNS0095608Whole white alabastrum(tetraploid) 250.589
CNS0095609Whole white alabastrum(tetraploid) 393.754
CNS0095610Silvery flower (tetraploid) 1262.797
CNS0095611Silvery flower (tetraploid) 2455.623
CNS0095612Silvery flower (tetraploid) 3424.206
CNS0095613Golden flower (tetraploid) 1143.734
CNS0095614Golden flower (tetraploid) 2158.831
CNS0095615Golden flower (tetraploid) 3191.461
CRA001975CRR073297Stem 181.136
CRR073298Stem 270.530
CRR073299Stem 3114.889
CRR073300Leaf 181.404
CRR073301Leaf 288.607
CRR073302Leaf 383.890
CRR073303Juvenile bud 1114.335
CRR073304Juvenile bud 2119.218
CRR073305Juvenile bud 3144.242
CRR073306Third green 150.095
CRR073307Third green 243.174
CRR073308Third green 347.625
CRR073309Second white 1189.962
CRR073310Second white 2105.139
CRR073311Second white 3157.488
CRR073312Silver flowering 1130.515
CRR073313Silver flowering 2148.912
CRR073314Silver flowering 3153.943
CRR073315Gold flowering 1140.474
CRR073316Gold flowering 2165.389
CRR073317Gold flowering 3150.849
CRR073318Tawny withering 1115.475
CRR073319Tawny withering 299.443
CRR073320Tawny withering 384.911