Gene detail

Detail information of GWHGAAZE021178

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004137806.1	9.03575E-39	PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus]
COG	YP_003435202.1	1E-23	30S ribosomal protein S12
Swissprot	tr\|P46297\|RS23_FRAAN	3E-40	40S ribosomal protein S23
trEMBL	tr\|A0A0A0KCM2\|A0A0A0KCM2_CUCSA	3E-39	Uncharacterized protein {ECO:0000313\|EMBL:KGN47293.1}
TAIR10	AT5G02960.1	3E-31	Ribosomal protein S12/S23 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	37516786	37528495	-
GWHAAZE00000006	mRNA	37516786	37528495	-
GWHAAZE00000006	exon	37528468	37528495	-
GWHAAZE00000006	exon	37527523	37528394	-
GWHAAZE00000006	exon	37520214	37520238	-
GWHAAZE00000006	exon	37519539	37519634	-
GWHAAZE00000006	exon	37519001	37519058	-
GWHAAZE00000006	exon	37518745	37518786	-
GWHAAZE00000006	exon	37517382	37517549	-
GWHAAZE00000006	exon	37517164	37517290	-
GWHAAZE00000006	exon	37517055	37517080	-
GWHAAZE00000006	exon	37516786	37516945	-
GWHAAZE00000006	CDS	37528468	37528495	-
GWHAAZE00000006	CDS	37527523	37528394	-
GWHAAZE00000006	CDS	37520214	37520238	-
GWHAAZE00000006	CDS	37519539	37519634	-
GWHAAZE00000006	CDS	37519001	37519058	-
GWHAAZE00000006	CDS	37518745	37518786	-
GWHAAZE00000006	CDS	37517382	37517549	-
GWHAAZE00000006	CDS	37517164	37517290	-
GWHAAZE00000006	CDS	37517055	37517080	-
GWHAAZE00000006	CDS	37516786	37516945	-

Transcript Sequence
>GWHTAAZE021202 ATGGGTCGGTGTTTGTCAGGACAACAAGATGCGATCTTGACCTTGGGTGAGCATAATGATTATCCTAATCAACAAGAAATTGCGTTCACTGGTGGCATTGATAGTCAATATATTCGATCAGCACGTCCATACGTAGTTCTAGCACCTGAATCAGAATCACAATTCCCAACTTATAGCCCACAAGGAAATCGAATTTACCGTAATGGTCATTTCAATCCTAATCCAAATTCGTCTGGGCAAACCACACAAGAATTTATGAATCGCCTAAGGAATGTTAGGTGTCCCACACGCGATGAAGTTATGATCAACCTTGTCTTCACCACCAACAACACTACAAATGTTCGAAAGAGAGACAACGTTGATGACCCATCACCAACTGAAGAACCCTATGTTGACCCAAGCTGTAATGTGGGGCATTACGTTGAGTGTGCCTTCAACTTCAATAACCAGGGGGAGGCGTTCATCTTCACTACTGATCAATGCTTGCAAATCAACTATGCGCCTGGCACAACTGAAGACTTCATTATTAAAGGACCCATGAGCATTGGTGATTTCTTTCCTTCTCTAAGCAATACAATATTTGCTACTGGAATCAATGCTGCATTAACCTCTTCTGTGAAAAATGAGGTGTATATATTTAGGAGTAATATATACATACTCCTTAACTTTGTGAGCGGAGACATTATTGGAGGACCCAAGAAGATCACTGATGGCTTCTACTCTTTAAAAGATACCATTTTTGAACATGGTATTGATGCAGCCTTTGCTTCCTCCGTATCTAATGAAGCCTATATATTTAAGGAGATCAATATGCACTTATTAATTTTGCACCGTGTACAACGGGTGATTATTTGGTTCAGAATCCGAAAAAGATTACTGATGGTTTCCTTTCTTGGAAAGCAGTCAGTGGATAACCGTTGCAAAAGACGAGCCTCTGACGCCGGCGCCCCGTCGATTTTGTCACGGAAGAAGGTGACAATTCCTCAGCCGGCGAAGAAGCTTTTCATCAAGCTCATTAAAGTCTCTGCTCTTTTAAAGTTCTTACCTTCTCACATCACTTTTGATGGCAAAGCATTGTGGTTCTTGAACTTCGAGAGAAGATTAAGATGTTGCAGTCACAGGAAGACTCGTGGAATGGGAGCTGATCGTAAGCTGAAGTCCCACCGTAGAAGGCAAAGATGGGTGACAAGTTTTACAAAAGATCTCATCTTGGAAATGAATGGAAAAAGCCTTTTGCAGGGTCTTCCCATGCAAAAGGAATTGTCCTTGAAAAGATGGAAGTCTAAAAATGGGATTGAGGCTAAGCAGCCCAACTCTACTATCACAAAGTTTGCTTGTGTTCAGCTGATTAAAAATGGGAAGAAGATTGCTGCCTTTGTACCCAATGATGGTTGCTTAAACTATATTGAGGAAAATTTTAATGCATATTACCTTGCAACTTGGATTCGAAAGGAAGGGGCATGTTGTGGGAGATATTCCTGGCATGGAGTGAAGTTCAAGGCTGTGAAGGTATCTGGTGTCTCTCTTTTTTATTTATTCAAAGAGAAGAAGGAGAAGCCTAATTTCAATAGTTGGAGTTCTTGGATTGTTGGATGGTTTTGA

Network for GWHGAAZE021178

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00164.26	Ribosom_S12_S23	412	520	5.90E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02973	RP-S23e, RPS23	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.070
	SRR3591706	second leaf	4.579
	SRR3591707	mature leaf	2.092
	SRR3591708	Shoot apex	3.598
	SRR3591709	Stem	22.892
	SRR3591710	White floral bud	3.557
	SRR3591711	White flower	2.369
	SRR3591712	Green floral bud	5.730
	SRR3591713	Yellow flower	1.301
SRP173429	SRR8316895	Juvenile bud stage	1.019
	SRR8316896	Juvenile bud stage	1.189
	SRR8316897	Juvenile bud stage	0.663
	SRR8316894	Third green stage	0.704
	SRR8316900	Third green stage	1.844
	SRR8316901	Third green stage	1.851
	SRR8316898	Complete white stage	0.122
	SRR8316899	Complete white stage	0.878
	SRR8316903	Complete white stage	0.243
	SRR8316902	Silver flowering stage	0.271
	SRR8316904	Silver flowering stage	0.237
	SRR8316905	Silver flowering stage	0.115
	SRR8316906	Gold flowering stage	0.413
	SRR8316907	Gold flowering stage	0.250
	SRR8316908	Gold flowering stage	0.358
SRP132670	SRR6706286	Control	0.969
	SRR6706287	Light intensity 50%	0.915
	SRR6706288	Light intensity 20%	1.266
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.698
	CNS0095593	Slightly white alabastrum(diploid) 2	2.900
	CNS0095594	Slightly white alabastrum(diploid) 3	2.298
	CNS0095595	Whole white alabastrum(diploid) 2	2.958
	CNS0095596	Whole white alabastrum(diploid) 3	4.301
	CNS0095597	Whole white alabastrum(diploid) 4	3.396
	CNS0095598	Silvery flower (diploied) 1	1.049
	CNS0095599	Silvery flower (diploied) 2	0.500
	CNS0095600	Silvery flower (diploied) 3	0.166
	CNS0095601	Golden flower (diploid) 1	0.886
	CNS0095602	Golden flower (diploid) 2	0.157
	CNS0095603	Golden flower (diploid) 3	0.284
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.368
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.707
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.137
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.743
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.662
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.658
	CNS0095610	Silvery flower (tetraploid) 1	0.928
	CNS0095611	Silvery flower (tetraploid) 2	0.543
	CNS0095612	Silvery flower (tetraploid) 3	1.232
	CNS0095613	Golden flower (tetraploid) 1	0.847
	CNS0095614	Golden flower (tetraploid) 2	0.767
	CNS0095615	Golden flower (tetraploid) 3	0.453
CRA001975	CRR073297	Stem 1	1.501
	CRR073298	Stem 2	1.444
	CRR073299	Stem 3	0.290
	CRR073300	Leaf 1	1.547
	CRR073301	Leaf 2	1.259
	CRR073302	Leaf 3	0.991
	CRR073303	Juvenile bud 1	0.855
	CRR073304	Juvenile bud 2	0.348
	CRR073305	Juvenile bud 3	0.258
	CRR073306	Third green 1	0.166
	CRR073307	Third green 2	0.292
	CRR073308	Third green 3	0.039
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.104
	CRR073311	Second white 3	0.038
	CRR073312	Silver flowering 1	0.155
	CRR073313	Silver flowering 2	0.246
	CRR073314	Silver flowering 3	0.155
	CRR073315	Gold flowering 1	0.351
	CRR073316	Gold flowering 2	0.600
	CRR073317	Gold flowering 3	0.618
	CRR073318	Tawny withering 1	4.827
	CRR073319	Tawny withering 2	3.738
	CRR073320	Tawny withering 3	6.366