Detail information of GWHGAAZE021189


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008457222.10PREDICTED: serine hydroxymethyltransferase 4 [Cucumis melo]
COGYP_003997797.11E-123glycine hydroxymethyltransferase
Swissprottr|O23254|GLYC4_ARATH0Serine hydroxymethyltransferase 4
trEMBLtr|A0A0A0LKC8|A0A0A0LKC8_CUCSA0Serine hydroxymethyltransferase {ECO:0000313|EMBL:KGN61489.1}
TAIR10AT4G13930.10serine hydroxymethyltransferase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3807014638074770-
GWHAAZE00000006mRNA3807014638074770-
GWHAAZE00000006exon3807014638070195-
GWHAAZE00000006exon3807028538070526-
GWHAAZE00000006exon3807146538071555-
GWHAAZE00000006exon3807164138072031-
GWHAAZE00000006exon3807318938073498-
GWHAAZE00000006exon3807440338074770-
GWHAAZE00000006CDS3807440338074770-
GWHAAZE00000006CDS3807318938073498-
GWHAAZE00000006CDS3807164138072031-
GWHAAZE00000006CDS3807146538071555-
GWHAAZE00000006CDS3807028538070526-
GWHAAZE00000006CDS3807014638070195-
Transcript Sequence

Network for GWHGAAZE021189

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00464.20SHMT124071.50E-183
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00600glyA, SHMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0019264biological_processglycine biosynthetic process from serine
GO:0035999biological_processtetrahydrofolate interconversion
GO:0004372molecular_functionglycine hydroxymethyltransferase activity
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf255.052
SRR3591706second leaf150.881
SRR3591707mature leaf64.706
SRR3591708Shoot apex110.748
SRR3591709Stem524.967
SRR3591710White floral bud120.618
SRR3591711White flower122.256
SRR3591712Green floral bud209.702
SRR3591713Yellow flower169.722
SRP173429 SRR8316895Juvenile bud stage 188.362
SRR8316896Juvenile bud stage 188.636
SRR8316897Juvenile bud stage 70.206
SRR8316894Third green stage 73.546
SRR8316900Third green stage 266.271
SRR8316901Third green stage 264.288
SRR8316898Complete white stage 73.632
SRR8316899Complete white stage 238.304
SRR8316903Complete white stage 87.575
SRR8316902Silver flowering stage74.389
SRR8316904Silver flowering stage86.396
SRR8316905Silver flowering stage46.048
SRR8316906Gold flowering stage 170.135
SRR8316907Gold flowering stage 174.853
SRR8316908Gold flowering stage 266.665
SRP132670SRR6706286Control235.495
SRR6706287Light intensity 50%266.493
SRR6706288Light intensity 20%303.949
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1113.159
CNS0095593Slightly white alabastrum(diploid) 2130.519
CNS0095594Slightly white alabastrum(diploid) 3101.510
CNS0095595Whole white alabastrum(diploid) 2112.615
CNS0095596Whole white alabastrum(diploid) 3125.652
CNS0095597Whole white alabastrum(diploid) 4110.999
CNS0095598Silvery flower (diploied) 165.665
CNS0095599Silvery flower (diploied) 283.404
CNS0095600Silvery flower (diploied) 384.256
CNS0095601Golden flower (diploid) 150.384
CNS0095602Golden flower (diploid) 2106.303
CNS0095603Golden flower (diploid) 398.749
CNS0095604Slightly white alabastrum(tetraploid) 1183.264
CNS0095605Slightly white alabastrum(tetraploid) 2139.273
CNS0095606Slightly white alabastrum(tetraploid) 3390.286
CNS0095607Whole white alabastrum(tetraploid) 1102.336
CNS0095608Whole white alabastrum(tetraploid) 298.232
CNS0095609Whole white alabastrum(tetraploid) 3339.752
CNS0095610Silvery flower (tetraploid) 190.370
CNS0095611Silvery flower (tetraploid) 272.831
CNS0095612Silvery flower (tetraploid) 388.886
CNS0095613Golden flower (tetraploid) 1101.156
CNS0095614Golden flower (tetraploid) 2133.684
CNS0095615Golden flower (tetraploid) 358.229
CRA001975CRR073297Stem 1300.641
CRR073298Stem 2259.039
CRR073299Stem 3367.782
CRR073300Leaf 1313.370
CRR073301Leaf 2293.320
CRR073302Leaf 3383.007
CRR073303Juvenile bud 1333.473
CRR073304Juvenile bud 2419.728
CRR073305Juvenile bud 3308.171
CRR073306Third green 1296.700
CRR073307Third green 2231.574
CRR073308Third green 3231.173
CRR073309Second white 1177.264
CRR073310Second white 2150.167
CRR073311Second white 3147.056
CRR073312Silver flowering 1349.159
CRR073313Silver flowering 2485.427
CRR073314Silver flowering 3448.138
CRR073315Gold flowering 1110.396
CRR073316Gold flowering 2129.328
CRR073317Gold flowering 3121.845
CRR073318Tawny withering 1227.760
CRR073319Tawny withering 2140.438
CRR073320Tawny withering 3310.756