Detail information of GWHGAAZE021190


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007163816.12.64237E-70hypothetical protein PHAVU_001G266800g [Phaseolus vulgaris]
Swissprottr|Q9SL02|RAD50_ARATH6E-63DNA repair protein RAD50
trEMBLtr|V7D2Q7|V7D2Q7_PHAVU1E-70Uncharacterized protein {ECO:0000313|EMBL:ESW35810.1}
TAIR10AT2G31970.12E-49DNA repair-recombination protein (RAD50)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3809800338099964-
GWHAAZE00000006mRNA3809800338099964-
GWHAAZE00000006exon3809800338098053-
GWHAAZE00000006exon3809820438098329-
GWHAAZE00000006exon3809890238099259-
GWHAAZE00000006exon3809990838099964-
GWHAAZE00000006five_prime_UTR3809995238099964-
GWHAAZE00000006CDS3809990838099951-
GWHAAZE00000006CDS3809890238099259-
GWHAAZE00000006CDS3809820438098329-
GWHAAZE00000006CDS3809800338098053-
Transcript Sequence

Network for GWHGAAZE021190

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10866RAD50 Homologous recombination map03440
Non-homologous end-joiningmap03450
Cellular senescencemap04218

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.421
SRR3591706second leaf1.386
SRR3591707mature leaf1.880
SRR3591708Shoot apex8.069
SRR3591709Stem8.444
SRR3591710White floral bud4.788
SRR3591711White flower9.467
SRR3591712Green floral bud3.503
SRR3591713Yellow flower6.637
SRP173429 SRR8316895Juvenile bud stage 6.677
SRR8316896Juvenile bud stage 7.967
SRR8316897Juvenile bud stage 4.082
SRR8316894Third green stage 4.846
SRR8316900Third green stage 9.990
SRR8316901Third green stage 7.529
SRR8316898Complete white stage 3.141
SRR8316899Complete white stage 8.492
SRR8316903Complete white stage 6.527
SRR8316902Silver flowering stage5.748
SRR8316904Silver flowering stage7.612
SRR8316905Silver flowering stage4.516
SRR8316906Gold flowering stage 12.893
SRR8316907Gold flowering stage 10.615
SRR8316908Gold flowering stage 9.284
SRP132670SRR6706286Control3.840
SRR6706287Light intensity 50%3.214
SRR6706288Light intensity 20%3.588
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.733
CNS0095593Slightly white alabastrum(diploid) 24.574
CNS0095594Slightly white alabastrum(diploid) 33.862
CNS0095595Whole white alabastrum(diploid) 24.481
CNS0095596Whole white alabastrum(diploid) 33.568
CNS0095597Whole white alabastrum(diploid) 43.849
CNS0095598Silvery flower (diploied) 17.057
CNS0095599Silvery flower (diploied) 22.922
CNS0095600Silvery flower (diploied) 39.230
CNS0095601Golden flower (diploid) 14.918
CNS0095602Golden flower (diploid) 26.849
CNS0095603Golden flower (diploid) 35.923
CNS0095604Slightly white alabastrum(tetraploid) 15.986
CNS0095605Slightly white alabastrum(tetraploid) 22.125
CNS0095606Slightly white alabastrum(tetraploid) 38.914
CNS0095607Whole white alabastrum(tetraploid) 13.778
CNS0095608Whole white alabastrum(tetraploid) 23.010
CNS0095609Whole white alabastrum(tetraploid) 38.559
CNS0095610Silvery flower (tetraploid) 18.809
CNS0095611Silvery flower (tetraploid) 28.919
CNS0095612Silvery flower (tetraploid) 310.488
CNS0095613Golden flower (tetraploid) 15.873
CNS0095614Golden flower (tetraploid) 26.294
CNS0095615Golden flower (tetraploid) 35.833
CRA001975CRR073297Stem 116.456
CRR073298Stem 214.671
CRR073299Stem 38.789
CRR073300Leaf 118.627
CRR073301Leaf 214.246
CRR073302Leaf 36.891
CRR073303Juvenile bud 110.376
CRR073304Juvenile bud 28.800
CRR073305Juvenile bud 39.491
CRR073306Third green 14.751
CRR073307Third green 24.407
CRR073308Third green 35.188
CRR073309Second white 12.921
CRR073310Second white 213.594
CRR073311Second white 37.411
CRR073312Silver flowering 13.154
CRR073313Silver flowering 23.059
CRR073314Silver flowering 35.687
CRR073315Gold flowering 11.994
CRR073316Gold flowering 29.261
CRR073317Gold flowering 31.553
CRR073318Tawny withering 19.378
CRR073319Tawny withering 29.587
CRR073320Tawny withering 310.411