Gene detail

Detail information of GWHGAAZE021194

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265088.1	0	PREDICTED: UDP-glucuronate 4-epimerase 6 [Vitis vinifera]
COG	YP_903056.1	8E-103	NAD-dependent epimerase/dehydratase
Swissprot	tr\|Q9LIS3\|GAE6_ARATH	0	UDP-glucuronate 4-epimerase 6
trEMBL	tr\|F6GWE5\|F6GWE5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44308.1}
TAIR10	AT3G23820.1	0	UDP-D-glucuronate 4-epimerase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	38230295	38232865	+
GWHAAZE00000006	mRNA	38230295	38232865	+
GWHAAZE00000006	exon	38230295	38230857	+
GWHAAZE00000006	exon	38231138	38231404	+
GWHAAZE00000006	exon	38232361	38232865	+
GWHAAZE00000006	CDS	38230295	38230857	+
GWHAAZE00000006	CDS	38231138	38231404	+
GWHAAZE00000006	CDS	38232361	38232865	+

Transcript Sequence
>GWHTAAZE021218 ATGGCTTCACCACCAGATACAAGCAAGACAACAAAGCTAGAGAGGTACAATAGCTACATCCGGAGAGTTAACAGCACAAAACTACTACAAGCCTCATCAAAGTTGTTATTTAGAGTCACACTTTTGGTTTCTTTGTGCCTAATATTTTTCTTTACACTAAACTACCCTCCAATTTCCGAGAATCACAAACACGCCCCCCACACCACTGCCCACTTCCTCTCCTCCGCCTTCTATGGCAGCGGCGCTGCCTGGGAGAAGAAGGTCCGCCACTCCTCCACCCCACGCCGCCCCGGTGGATTCTCTGTTCTTGTCACCGGGGCTGGCGGGTTTGTCGGGACCCATTGTTCCCTCGCTTTGAAAAAGCGAGGGGATGGCGTTCTGGGTCTCGACAACTTTAACTCGTACTATGATCCATCGCTTAAACGCGCCCGCCAAAATCTTCTGCAGAAACATGAGATCTATGTAGTCGAAGCCGATATAAACGATGCTGTTTTACTTGCCAAGTTGTTCGACATTGTGCCGTTCACTCACGTGCTCCACCTCGCGGCGCAAGCCGGTGTGAGGTACGCGATGCAGAATCCTCAATCATACGTTAATTCCAACATTGCAGGATTCGTTAATATCCTCGAGATTGCAAAAGCCGCTGATCCACAGCCGTCGATTGTGTGGGCATCATCGAGCTCCGTTTACGGTCTGAATACACAGAATCCGTTCTCGGAGTCTCACCGGACCGATCAGCCGGCCAGTCTATACGCCGCAACGAAGAAAGCCGGAGAGGAAATTGCCCACACTTATAATCATATTTACGGACTTGCCATCACTGGACTAAGATTCTTCACAGTGTACGGACCCTGGGGAAGGCCAGACATGGCCTACTTCTTCTTCACAAAAGATATACTCCAAGGCAAGACTGTAAACATATACCGCACGAGCGACGATAAAGAGGTGGCGCGTGACTTCACCTACATCGATGATATTGTCAAGGGCTGTCTCGGAGCTCTCGACACTGCCGAAAAATCCACCGGCAGCGGGGGCAAGAAGCGTGCCCCCGCGCAACTCCGCATCTACAACCTCGGCAACACGGCCCCGGTTACAGTGGCCAAATTGGTAAATATTTTGGAGAGCTTGTTGAATGTCAAAGCAAAGAAGCATGTGATTAGAATGCCCCGAAACGGTGACGTTCCGTATACCCATGCTAACGTGAGCCTGGCGTACAGGGATTTCGGGTACAAGCCAACTACAGATTTGTCCACTGGGTTGAGAAAGTTCGTCAAGTGGTACGTTAGTTATTACGGTATCCAACCAAGGGTAAAAAAGGAAAGTAACATCAATTAA

Network for GWHGAAZE021194

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	103	422	2.30E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08679	E5.1.3.6	Metabolic pathways	map01100
K08679	E5.1.3.6	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	186.221
	SRR3591706	second leaf	120.597
	SRR3591707	mature leaf	91.859
	SRR3591708	Shoot apex	40.313
	SRR3591709	Stem	94.936
	SRR3591710	White floral bud	184.205
	SRR3591711	White flower	68.933
	SRR3591712	Green floral bud	486.682
	SRR3591713	Yellow flower	9.605
SRP173429	SRR8316895	Juvenile bud stage	181.472
	SRR8316896	Juvenile bud stage	212.333
	SRR8316897	Juvenile bud stage	89.208
	SRR8316894	Third green stage	104.958
	SRR8316900	Third green stage	458.234
	SRR8316901	Third green stage	481.758
	SRR8316898	Complete white stage	96.871
	SRR8316899	Complete white stage	999.235
	SRR8316903	Complete white stage	131.711
	SRR8316902	Silver flowering stage	39.608
	SRR8316904	Silver flowering stage	33.966
	SRR8316905	Silver flowering stage	13.117
	SRR8316906	Gold flowering stage	20.013
	SRR8316907	Gold flowering stage	17.989
	SRR8316908	Gold flowering stage	25.019
SRP132670	SRR6706286	Control	545.577
	SRR6706287	Light intensity 50%	587.146
	SRR6706288	Light intensity 20%	636.990
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	146.505
	CNS0095593	Slightly white alabastrum(diploid) 2	214.861
	CNS0095594	Slightly white alabastrum(diploid) 3	121.655
	CNS0095595	Whole white alabastrum(diploid) 2	177.250
	CNS0095596	Whole white alabastrum(diploid) 3	128.485
	CNS0095597	Whole white alabastrum(diploid) 4	150.090
	CNS0095598	Silvery flower (diploied) 1	143.463
	CNS0095599	Silvery flower (diploied) 2	132.838
	CNS0095600	Silvery flower (diploied) 3	76.979
	CNS0095601	Golden flower (diploid) 1	123.627
	CNS0095602	Golden flower (diploid) 2	153.202
	CNS0095603	Golden flower (diploid) 3	151.520
	CNS0095604	Slightly white alabastrum(tetraploid) 1	152.958
	CNS0095605	Slightly white alabastrum(tetraploid) 2	86.439
	CNS0095606	Slightly white alabastrum(tetraploid) 3	486.913
	CNS0095607	Whole white alabastrum(tetraploid) 1	86.163
	CNS0095608	Whole white alabastrum(tetraploid) 2	89.588
	CNS0095609	Whole white alabastrum(tetraploid) 3	352.453
	CNS0095610	Silvery flower (tetraploid) 1	15.894
	CNS0095611	Silvery flower (tetraploid) 2	21.980
	CNS0095612	Silvery flower (tetraploid) 3	19.023
	CNS0095613	Golden flower (tetraploid) 1	3.266
	CNS0095614	Golden flower (tetraploid) 2	17.414
	CNS0095615	Golden flower (tetraploid) 3	9.503
CRA001975	CRR073297	Stem 1	650.869
	CRR073298	Stem 2	727.522
	CRR073299	Stem 3	605.698
	CRR073300	Leaf 1	1540.555
	CRR073301	Leaf 2	1464.443
	CRR073302	Leaf 3	1458.385
	CRR073303	Juvenile bud 1	1324.765
	CRR073304	Juvenile bud 2	939.892
	CRR073305	Juvenile bud 3	1560.164
	CRR073306	Third green 1	185.988
	CRR073307	Third green 2	196.455
	CRR073308	Third green 3	184.415
	CRR073309	Second white 1	47.806
	CRR073310	Second white 2	8.413
	CRR073311	Second white 3	6.440
	CRR073312	Silver flowering 1	12.716
	CRR073313	Silver flowering 2	25.634
	CRR073314	Silver flowering 3	16.245
	CRR073315	Gold flowering 1	310.048
	CRR073316	Gold flowering 2	470.718
	CRR073317	Gold flowering 3	403.141
	CRR073318	Tawny withering 1	398.608
	CRR073319	Tawny withering 2	362.068
	CRR073320	Tawny withering 3	301.900