Detail information of GWHGAAZE021215


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP05558.11.07083E-12unnamed protein product [Coffea canephora]
Swissprottr|Q9M667|RPP13_ARATH0.00000001Disease resistance protein RPP13
trEMBLtr|K4C799|K4C799_SOLLC4E-13Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g064690.1.1}
TAIR10AT3G46530.10.0000002NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3898842338988587+
GWHAAZE00000006mRNA3898842338988587+
GWHAAZE00000006exon3898842338988587+
GWHAAZE00000006CDS3898842338988587+
Transcript Sequence

Network for GWHGAAZE021215

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0127


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC2548.00E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.928
SRR3591706second leaf7.004
SRR3591707mature leaf10.707
SRR3591708Shoot apex10.094
SRR3591709Stem9.321
SRR3591710White floral bud4.091
SRR3591711White flower0.399
SRR3591712Green floral bud3.757
SRR3591713Yellow flower0.890
SRP173429 SRR8316895Juvenile bud stage 22.499
SRR8316896Juvenile bud stage 17.216
SRR8316897Juvenile bud stage 4.472
SRR8316894Third green stage 8.403
SRR8316900Third green stage 25.115
SRR8316901Third green stage 17.629
SRR8316898Complete white stage 4.526
SRR8316899Complete white stage 22.115
SRR8316903Complete white stage 11.499
SRR8316902Silver flowering stage3.928
SRR8316904Silver flowering stage10.378
SRR8316905Silver flowering stage3.795
SRR8316906Gold flowering stage 8.863
SRR8316907Gold flowering stage 8.223
SRR8316908Gold flowering stage 5.116
SRP132670SRR6706286Control14.942
SRR6706287Light intensity 50%22.821
SRR6706288Light intensity 20%22.289
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.830
CNS0095593Slightly white alabastrum(diploid) 22.201
CNS0095594Slightly white alabastrum(diploid) 31.114
CNS0095595Whole white alabastrum(diploid) 25.775
CNS0095596Whole white alabastrum(diploid) 32.434
CNS0095597Whole white alabastrum(diploid) 44.225
CNS0095598Silvery flower (diploied) 121.394
CNS0095599Silvery flower (diploied) 25.741
CNS0095600Silvery flower (diploied) 311.352
CNS0095601Golden flower (diploid) 15.804
CNS0095602Golden flower (diploid) 213.090
CNS0095603Golden flower (diploid) 312.016
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.021
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.017
CNS0095610Silvery flower (tetraploid) 10.046
CNS0095611Silvery flower (tetraploid) 20.039
CNS0095612Silvery flower (tetraploid) 30.029
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 112.545
CRR073298Stem 29.490
CRR073299Stem 31.078
CRR073300Leaf 19.319
CRR073301Leaf 27.864
CRR073302Leaf 31.062
CRR073303Juvenile bud 10.277
CRR073304Juvenile bud 20.361
CRR073305Juvenile bud 30.393
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.769
CRR073310Second white 20.046
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.675
CRR073315Gold flowering 13.503
CRR073316Gold flowering 25.246
CRR073317Gold flowering 32.887
CRR073318Tawny withering 13.496
CRR073319Tawny withering 22.191
CRR073320Tawny withering 30.807