Detail information of GWHGAAZE021216


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP19424.13.04953E-47unnamed protein product [Coffea canephora]
Swissprottr|Q6L438|R1A6_SOLDE6E-32Putative late blight resistance protein homolog R1A-6
trEMBLtr|A0A068VFT7|A0A068VFT7_COFCA1E-47Coffea canephora DH200=94 genomic scaffold, scaffold_478 {ECO:0000313|EMBL:CDP19424.1}
TAIR10AT3G46530.12E-24NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3898866338989121+
GWHAAZE00000006mRNA3898866338989121+
GWHAAZE00000006exon3898866338989121+
GWHAAZE00000006CDS3898866338989121+
Transcript Sequence

Network for GWHGAAZE021216

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0127


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC21418.50E-35
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.040
SRR3591706second leaf4.475
SRR3591707mature leaf10.168
SRR3591708Shoot apex2.869
SRR3591709Stem4.859
SRR3591710White floral bud2.528
SRR3591711White flower2.974
SRR3591712Green floral bud1.950
SRR3591713Yellow flower1.753
SRP173429 SRR8316895Juvenile bud stage 10.797
SRR8316896Juvenile bud stage 13.488
SRR8316897Juvenile bud stage 2.715
SRR8316894Third green stage 8.838
SRR8316900Third green stage 15.819
SRR8316901Third green stage 15.120
SRR8316898Complete white stage 2.873
SRR8316899Complete white stage 17.137
SRR8316903Complete white stage 10.922
SRR8316902Silver flowering stage2.502
SRR8316904Silver flowering stage6.128
SRR8316905Silver flowering stage3.524
SRR8316906Gold flowering stage 5.391
SRR8316907Gold flowering stage 6.162
SRR8316908Gold flowering stage 6.104
SRP132670SRR6706286Control8.213
SRR6706287Light intensity 50%6.739
SRR6706288Light intensity 20%8.704
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.963
CNS0095593Slightly white alabastrum(diploid) 22.918
CNS0095594Slightly white alabastrum(diploid) 31.955
CNS0095595Whole white alabastrum(diploid) 24.171
CNS0095596Whole white alabastrum(diploid) 31.705
CNS0095597Whole white alabastrum(diploid) 43.035
CNS0095598Silvery flower (diploied) 111.574
CNS0095599Silvery flower (diploied) 25.315
CNS0095600Silvery flower (diploied) 38.150
CNS0095601Golden flower (diploid) 14.538
CNS0095602Golden flower (diploid) 29.071
CNS0095603Golden flower (diploid) 37.763
CNS0095604Slightly white alabastrum(tetraploid) 11.159
CNS0095605Slightly white alabastrum(tetraploid) 20.086
CNS0095606Slightly white alabastrum(tetraploid) 31.996
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.450
CNS0095609Whole white alabastrum(tetraploid) 30.912
CNS0095610Silvery flower (tetraploid) 12.184
CNS0095611Silvery flower (tetraploid) 21.648
CNS0095612Silvery flower (tetraploid) 31.953
CNS0095613Golden flower (tetraploid) 10.051
CNS0095614Golden flower (tetraploid) 21.297
CNS0095615Golden flower (tetraploid) 30.459
CRA001975CRR073297Stem 17.534
CRR073298Stem 23.757
CRR073299Stem 31.073
CRR073300Leaf 15.566
CRR073301Leaf 22.238
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.539
CRR073304Juvenile bud 20.004
CRR073305Juvenile bud 30.644
CRR073306Third green 10.111
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.097
CRR073310Second white 20.307
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.547
CRR073316Gold flowering 21.448
CRR073317Gold flowering 30.311
CRR073318Tawny withering 11.629
CRR073319Tawny withering 22.102
CRR073320Tawny withering 30.297