Detail information of GWHGAAZE021217


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP05514.12.49289E-60unnamed protein product [Coffea canephora]
Swissprottr|Q6L3Z7|R1B14_SOLDE4E-28Putative late blight resistance protein homolog R1B-14
trEMBLtr|A0A068UBE0|A0A068UBE0_COFCA9E-61Coffea canephora DH200=94 genomic scaffold, scaffold_16 {ECO:0000313|EMBL:CDP05514.1}
TAIR10AT1G59780.11E-10NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3898955538990607+
GWHAAZE00000006mRNA3898955538990607+
GWHAAZE00000006exon3898955538990607+
GWHAAZE00000006CDS3898955538990607+
Transcript Sequence

Network for GWHGAAZE021217

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0127


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.721
SRR3591706second leaf9.003
SRR3591707mature leaf8.839
SRR3591708Shoot apex5.743
SRR3591709Stem6.599
SRR3591710White floral bud2.897
SRR3591711White flower3.521
SRR3591712Green floral bud4.932
SRR3591713Yellow flower1.437
SRP173429 SRR8316895Juvenile bud stage 12.993
SRR8316896Juvenile bud stage 15.480
SRR8316897Juvenile bud stage 4.312
SRR8316894Third green stage 8.707
SRR8316900Third green stage 14.360
SRR8316901Third green stage 13.583
SRR8316898Complete white stage 2.762
SRR8316899Complete white stage 16.480
SRR8316903Complete white stage 9.836
SRR8316902Silver flowering stage3.120
SRR8316904Silver flowering stage8.032
SRR8316905Silver flowering stage2.875
SRR8316906Gold flowering stage 5.381
SRR8316907Gold flowering stage 4.954
SRR8316908Gold flowering stage 2.284
SRP132670SRR6706286Control3.027
SRR6706287Light intensity 50%4.609
SRR6706288Light intensity 20%4.799
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.642
CNS0095593Slightly white alabastrum(diploid) 25.007
CNS0095594Slightly white alabastrum(diploid) 33.329
CNS0095595Whole white alabastrum(diploid) 25.497
CNS0095596Whole white alabastrum(diploid) 31.838
CNS0095597Whole white alabastrum(diploid) 43.486
CNS0095598Silvery flower (diploied) 112.122
CNS0095599Silvery flower (diploied) 210.329
CNS0095600Silvery flower (diploied) 39.034
CNS0095601Golden flower (diploid) 15.302
CNS0095602Golden flower (diploid) 29.446
CNS0095603Golden flower (diploid) 38.383
CNS0095604Slightly white alabastrum(tetraploid) 10.308
CNS0095605Slightly white alabastrum(tetraploid) 20.555
CNS0095606Slightly white alabastrum(tetraploid) 30.402
CNS0095607Whole white alabastrum(tetraploid) 10.490
CNS0095608Whole white alabastrum(tetraploid) 20.603
CNS0095609Whole white alabastrum(tetraploid) 30.161
CNS0095610Silvery flower (tetraploid) 10.584
CNS0095611Silvery flower (tetraploid) 20.411
CNS0095612Silvery flower (tetraploid) 30.455
CNS0095613Golden flower (tetraploid) 10.229
CNS0095614Golden flower (tetraploid) 20.201
CNS0095615Golden flower (tetraploid) 30.292
CRA001975CRR073297Stem 14.087
CRR073298Stem 24.091
CRR073299Stem 30.884
CRR073300Leaf 13.692
CRR073301Leaf 23.330
CRR073302Leaf 30.467
CRR073303Juvenile bud 11.069
CRR073304Juvenile bud 20.060
CRR073305Juvenile bud 30.536
CRR073306Third green 10.043
CRR073307Third green 20.567
CRR073308Third green 30.123
CRR073309Second white 10.000
CRR073310Second white 20.440
CRR073311Second white 30.073
CRR073312Silver flowering 10.063
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.089
CRR073315Gold flowering 11.217
CRR073316Gold flowering 22.839
CRR073317Gold flowering 30.449
CRR073318Tawny withering 11.132
CRR073319Tawny withering 21.567
CRR073320Tawny withering 30.952