Detail information of GWHGAAZE021221


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009797340.11.2968E-55PREDICTED: F-box protein At3g07870-like isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9SFC7|FB135_ARATH4E-16F-box protein At3g07870
trEMBLtr|A0A059B7J8|A0A059B7J8_EUCGR1E-45Uncharacterized protein {ECO:0000313|EMBL:KCW62103.1}
TAIR10AT3G07870.11E-13F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene3904158839042862-
GWHAAZE00000006mRNA3904158839042862-
GWHAAZE00000006exon3904158839042862-
GWHAAZE00000006CDS3904158839042862-
Transcript Sequence

Network for GWHGAAZE021221

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box31642.20E-08
PF07734.14FBA_12433528.20E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.636
SRR3591706second leaf0.196
SRR3591707mature leaf0.486
SRR3591708Shoot apex0.782
SRR3591709Stem0.557
SRR3591710White floral bud1.161
SRR3591711White flower0.347
SRR3591712Green floral bud1.286
SRR3591713Yellow flower0.688
SRP173429 SRR8316895Juvenile bud stage 0.986
SRR8316896Juvenile bud stage 2.554
SRR8316897Juvenile bud stage 1.187
SRR8316894Third green stage 0.543
SRR8316900Third green stage 2.005
SRR8316901Third green stage 2.166
SRR8316898Complete white stage 0.603
SRR8316899Complete white stage 1.838
SRR8316903Complete white stage 0.853
SRR8316902Silver flowering stage0.279
SRR8316904Silver flowering stage0.378
SRR8316905Silver flowering stage0.170
SRR8316906Gold flowering stage 1.040
SRR8316907Gold flowering stage 0.796
SRR8316908Gold flowering stage 0.918
SRP132670SRR6706286Control2.056
SRR6706287Light intensity 50%2.200
SRR6706288Light intensity 20%2.001
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.568
CNS0095593Slightly white alabastrum(diploid) 23.018
CNS0095594Slightly white alabastrum(diploid) 35.108
CNS0095595Whole white alabastrum(diploid) 25.049
CNS0095596Whole white alabastrum(diploid) 34.994
CNS0095597Whole white alabastrum(diploid) 45.404
CNS0095598Silvery flower (diploied) 11.505
CNS0095599Silvery flower (diploied) 21.388
CNS0095600Silvery flower (diploied) 32.108
CNS0095601Golden flower (diploid) 12.117
CNS0095602Golden flower (diploid) 21.555
CNS0095603Golden flower (diploid) 31.603
CNS0095604Slightly white alabastrum(tetraploid) 14.015
CNS0095605Slightly white alabastrum(tetraploid) 25.357
CNS0095606Slightly white alabastrum(tetraploid) 32.217
CNS0095607Whole white alabastrum(tetraploid) 16.094
CNS0095608Whole white alabastrum(tetraploid) 25.636
CNS0095609Whole white alabastrum(tetraploid) 33.868
CNS0095610Silvery flower (tetraploid) 11.554
CNS0095611Silvery flower (tetraploid) 21.825
CNS0095612Silvery flower (tetraploid) 31.280
CNS0095613Golden flower (tetraploid) 10.836
CNS0095614Golden flower (tetraploid) 20.938
CNS0095615Golden flower (tetraploid) 30.516
CRA001975CRR073297Stem 11.999
CRR073298Stem 21.784
CRR073299Stem 31.691
CRR073300Leaf 12.245
CRR073301Leaf 20.983
CRR073302Leaf 31.820
CRR073303Juvenile bud 12.321
CRR073304Juvenile bud 21.546
CRR073305Juvenile bud 30.764
CRR073306Third green 10.882
CRR073307Third green 20.680
CRR073308Third green 30.662
CRR073309Second white 11.983
CRR073310Second white 20.599
CRR073311Second white 30.689
CRR073312Silver flowering 11.366
CRR073313Silver flowering 21.401
CRR073314Silver flowering 31.265
CRR073315Gold flowering 11.254
CRR073316Gold flowering 20.102
CRR073317Gold flowering 30.039
CRR073318Tawny withering 11.236
CRR073319Tawny withering 21.247
CRR073320Tawny withering 32.471