Gene detail

Detail information of GWHGAAZE021244

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010034467.1	1.24395E-49	PREDICTED: 40S ribosomal protein S15-like [Eucalyptus grandis]
COG	YP_005841958.1	8E-16	30S ribosomal protein S19
Swissprot	tr\|P31674\|RS15_ORYSJ	1E-50	40S ribosomal protein S15
trEMBL	tr\|W9RI49\|W9RI49_9ROSA	3E-49	40S ribosomal protein S15 {ECO:0000313\|EMBL:EXB93222.1}
TAIR10	AT5G09500.1	5E-39	Ribosomal protein S19 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	39955187	39956037	+
GWHAAZE00000006	mRNA	39955187	39956037	+
GWHAAZE00000006	exon	39955187	39955543	+
GWHAAZE00000006	exon	39955651	39956037	+
GWHAAZE00000006	CDS	39955187	39955543	+
GWHAAZE00000006	CDS	39955651	39956037	+

Transcript Sequence
>GWHTAAZE021268 ATGTGGATCAGGGGAGTCGATCTCGATGCTCTTCTCGACATGTCCACCGATGACCTCGTCAAGCTCTTCACTGCCCGTGCTCATCGAAGGTTCCAGAGAGGTTTAAAGAGGAAGCCAATGGCTTTGATCAAGAAGCTGCGCAAGGCTAAATGGGAGGATCCTGCTGGCGAGAAGCCGGAACTTGTGAAGACCCACCTGTGCAACATGATCATTGTACCCGAAATGATCAGAAGCATCGTTGGTGTGTACAATGGCAAGACCTTCAATCAGATTGAGATCAAGCATGAAGCACTCGTCTTTCTTCTTCCTCTAAGCGCTATCAATCTGCTCTTCTTTCTCGATCTGATATGTTCATGGCATCCTGTGGAGGCGAAGAATGGGGTTTGTCCAGTTTGTGCCATGAGAGTGGGGGTTGACATGGTTGCACATATAACGTTGCAATATGGAAACATTGCTAAGGTGCAGCGCAACCTGTGGGAGGTCATATGGGCGGATCAGGCGATTAGGGTAGGGATGGGAAAGTCGGGTTGGGGGAGGATGAGGGCCCCACCTACTGATGATCTACTGTTATATGTGATAGCAGCATGTGTGTTGCAAAGGAGGAAGTTGATTATAGAGAAATATGGGAGCATGGATGAAATCTTGAGGGAGTGCAATAATATGGCTGGACATTTTGATGTCTGGATGCTTTTAGATGATGCCCATGATTTGGTGGTAGCAATGATCGACAGCTCTGCGTGCTAG

Network for GWHGAAZE021244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00203.22	Ribosomal_S19	29	97	3.40E-18
PF05605.13	zf-Di19	119	148	3.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02958	RP-S15e, RPS15	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.180
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.109
	SRR3591711	White flower	0.054
	SRR3591712	Green floral bud	0.003
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.029
	SRR8316897	Juvenile bud stage	0.031
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.023
	SRR8316901	Third green stage	0.015
	SRR8316898	Complete white stage	0.078
	SRR8316899	Complete white stage	0.107
	SRR8316903	Complete white stage	0.036
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.031
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.031
	SRR6706288	Light intensity 20%	0.007
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.024
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.038
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.022
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.046
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.031
	CRR073300	Leaf 1	0.030
	CRR073301	Leaf 2	0.039
	CRR073302	Leaf 3	0.055
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.044
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.025
	CRR073308	Third green 3	0.026
	CRR073309	Second white 1	0.089
	CRR073310	Second white 2	0.080
	CRR073311	Second white 3	0.075
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.079
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.049
	CRR073316	Gold flowering 2	0.029
	CRR073317	Gold flowering 3	0.021
	CRR073318	Tawny withering 1	0.043
	CRR073319	Tawny withering 2	0.021
	CRR073320	Tawny withering 3	0.050