Gene detail

Detail information of GWHGAAZE021373

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009612266.1	7.61863E-27	PREDICTED: uncharacterized protein LOC104105621 [Nicotiana tomentosiformis]
trEMBL	tr\|K4DE67\|K4DE67_SOLLC	9E-25	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g036100.1.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	50513444	50516569	+
GWHAAZE00000006	mRNA	50513444	50516569	+
GWHAAZE00000006	exon	50513444	50513873	+
GWHAAZE00000006	exon	50513963	50514049	+
GWHAAZE00000006	exon	50514197	50514601	+
GWHAAZE00000006	exon	50515527	50515945	+
GWHAAZE00000006	exon	50516305	50516382	+
GWHAAZE00000006	exon	50516462	50516569	+
GWHAAZE00000006	CDS	50513444	50513873	+
GWHAAZE00000006	CDS	50513963	50514049	+
GWHAAZE00000006	CDS	50514197	50514601	+
GWHAAZE00000006	CDS	50515527	50515945	+
GWHAAZE00000006	CDS	50516305	50516382	+
GWHAAZE00000006	CDS	50516462	50516569	+

Transcript Sequence
>GWHTAAZE021397 ATGGTTGAAGATTTAAGGTATAAGAATATTGCAAAGTTGTATTACCTTATTCATAGAAAGTCAATGGAAACTGGTCTTAGGCTAATTGACAATGATAAAGACATAAGTGAGATGATGGTTGATGTGCAAGCTACTGGTGGTATTGAAATTAATGTTGAAGATGATAAAGGCAAAAGTAAAGTAGATGATACTGCACCCAGTGCCCCCATTACCCCTAATGATAATATGATGGATGATGTGAGGGTTGAAGTAGGTGAAGAAAGTGAAAATGAAAGTGATGGTAGTTTAAACATTGATACTGATAATAAAGAGCTTGCAGAGATTAGGAAGAAAATTCATAGTTTGAAATTAAAAATTAGGCAAGTTAATGCACCCGGCCCCCACACCGCTGATATCAGCACCCAATGCCTCCACTACCCCCACTGCCCCTGTGATGATTTTGTGACTGATAATGTAAGGGATAGGGAGTATGATAGTGAAAATGTTGACTCTGATCAATACACTAGTCCATTGTCCATTGCTAAAGGGTACCCTATAAAGTTTAAGAGGAATGGTAAACATTGGATACTCAGTATGTGTACTGAAGGGTGTCCTTGCAGATTGTGGGCAACTTACATGCAAGATGAAGATAGCTTCCAAATTACATCACTTAGAGGAGAGCATAAGTGCATTAGATATTTCAAGATAAAGCTTACTAATTCTAAGTGGCTTGCAAAACAATACGAAAAGAAAATATTTGCTAATCTCAAGTGGAAATTGAAAGACTTCAAAGATGATGTGTTAGAGAAATATGCAGTCAATGTCTCCTTGGTTCAGTGTTATAGTGCTAAAAAATTTGCTTTAGGGGAAGTTGAACTATTATTGATTGATCATTATGGTAAACTGTGGGATTATGCAAGTGAAGTTATTAGGTCTAATCCTGTGAGAAATGGGATGGATGGATATGTGGTGGACCTCCAAGCTTGTACATGTAGTTACAGGAATTGGGAAGTATGTGGGATCCCTTGGCCACGTGCCATTTCAGCCATCTATTACAAGAAGGATGACCCTTTAAAATATATGGCCGAGTGGTATAATATTGAGCTAACGAATAAGGCCTATTCACATTTCTTGCATCCGTTGAATGGTGAGAAGATGTGGAGGAAGACACCTTATGAAAAGTTCTTACCTCCACTTACTAGAAGGATGCCTGGGAGGCCTCAACATGCTCAGAGGAAGGAATTACACAAGAAAGATAAAGAGATGAAGAACCCAACTCAAATTAGCCGAAGGGGAAGACAAATGAGTTGTAGCAAATGCAAACAATATGGCCATAACAAGAAAACATGTCAAGCAACTAATAAGGTGAGGAAAAAGGACAAAATACCTAATGGCTTTGGAATGTACATATCTCCGGCTACTGGTAACACATTTATAAGGTTTTCAGGCCAAAGAGGCCCTGTACACCTCTCAAAGACTGCTTCAGCTTTAAATCCAATTGGGACTGCAGGATCACAATCCACTACAACTACAACAAGGGCTAAATGA

Network for GWHGAAZE021373

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.873
	SRR8316896	Juvenile bud stage	1.564
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.603
	SRR8316900	Third green stage	1.844
	SRR8316901	Third green stage	1.770
	SRR8316898	Complete white stage	0.325
	SRR8316899	Complete white stage	1.005
	SRR8316903	Complete white stage	1.165
	SRR8316902	Silver flowering stage	0.769
	SRR8316904	Silver flowering stage	0.977
	SRR8316905	Silver flowering stage	0.411
	SRR8316906	Gold flowering stage	1.525
	SRR8316907	Gold flowering stage	1.076
	SRR8316908	Gold flowering stage	0.711
SRP132670	SRR6706286	Control	0.714
	SRR6706287	Light intensity 50%	0.509
	SRR6706288	Light intensity 20%	0.611
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.144
	CNS0095593	Slightly white alabastrum(diploid) 2	1.581
	CNS0095594	Slightly white alabastrum(diploid) 3	1.410
	CNS0095595	Whole white alabastrum(diploid) 2	1.178
	CNS0095596	Whole white alabastrum(diploid) 3	0.311
	CNS0095597	Whole white alabastrum(diploid) 4	0.746
	CNS0095598	Silvery flower (diploied) 1	1.212
	CNS0095599	Silvery flower (diploied) 2	0.971
	CNS0095600	Silvery flower (diploied) 3	1.604
	CNS0095601	Golden flower (diploid) 1	0.760
	CNS0095602	Golden flower (diploid) 2	1.191
	CNS0095603	Golden flower (diploid) 3	0.844
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.016
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.637
	CRR073298	Stem 2	0.805
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.714
	CRR073301	Leaf 2	0.493
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.023
	CRR073304	Juvenile bud 2	0.005
	CRR073305	Juvenile bud 3	0.099
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.088
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.668
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.073
	CRR073319	Tawny withering 2	0.351
	CRR073320	Tawny withering 3	0.306