Gene detail

Detail information of GWHGAAZE021459

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644000.1	5.32155E-27	PREDICTED: F-box protein SKIP1-like [Vitis vinifera]
Swissprot	tr\|Q9ZPE4\|FBW2_ARATH	0.0000007	F-box protein FBW2
trEMBL	tr\|F6GVY0\|F6GVY0_VITVI	4E-27	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44115.1}
TAIR10	AT4G08980.5	0.000002	F-BOX WITH WD-40 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	53848319	53855532	+
GWHAAZE00000006	mRNA	53848319	53855532	+
GWHAAZE00000006	exon	53848319	53848677	+
GWHAAZE00000006	exon	53848748	53848785	+
GWHAAZE00000006	exon	53853919	53853994	+
GWHAAZE00000006	exon	53855295	53855532	+
GWHAAZE00000006	CDS	53848319	53848677	+
GWHAAZE00000006	CDS	53848748	53848785	+
GWHAAZE00000006	CDS	53853919	53853994	+
GWHAAZE00000006	CDS	53855295	53855532	+

Transcript Sequence
>GWHTAAZE021483 ATGTTGCGACAGATGGAAATACGAAAATGGGAGGATTTAAGCATGGATTGCTTGGTGAATGTATTTGGGCGAGTGGGAATGGAATCATTGATATTGGATGTACCATTTGTGTGCAAGTCATGGCACAATGCCACTCGCAATCCCCTTTGCTGGCAAAATCTCGATTTCTCTACAGTCTCATCCTTCCCCTTTTTGAAGCCTTCTTTCCAACAAAGAATAAGGGCTGAATTACATGTAAAGGGAAAAATTGGTTTAACTGCATTCGTCAAGTCTGTACTCCTTCGTAGCAGCGGATTTGCCACAAAGATTGTCTTTCCTAGACACACTAAACATGAGGCACTGGTTCTTGCTGCTAATGTGGAAAATATGGCAATTCTGTCAAAGGGGGCAGGCTTATCGGTGGAACTGTCACTGGTACTGTTTTCCCTAGCTATTGTAAACATAATTAAGGTGCTGGTTTTGGCTGCTAAAGTCGATGTTACAGGGTTCGTGGGTCTACGAAGTTTTGCAATGATGTTACAGGATTCATGGGTCTGTGCAGGCGACTTCAGTGAAATTGTTAGCGACTTTGATGAGATTATTTTTGATAATTGGAAAGAAGGGGATATGGGGGATGCAATCCCAAATGCTGCGCACGTTATTACAGCGTGCACGTCTGCACTTAAGGGATGGAAATCAGCAACCGGTGTTGGACTGACAGAACAAGTTTAA

Network for GWHGAAZE021459

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	9	52	0.00026

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.021
	SRR3591706	second leaf	5.233
	SRR3591707	mature leaf	4.711
	SRR3591708	Shoot apex	7.108
	SRR3591709	Stem	10.009
	SRR3591710	White floral bud	7.167
	SRR3591711	White flower	10.468
	SRR3591712	Green floral bud	6.444
	SRR3591713	Yellow flower	8.959
SRP173429	SRR8316895	Juvenile bud stage	3.085
	SRR8316896	Juvenile bud stage	6.966
	SRR8316897	Juvenile bud stage	3.079
	SRR8316894	Third green stage	2.883
	SRR8316900	Third green stage	8.181
	SRR8316901	Third green stage	6.447
	SRR8316898	Complete white stage	3.220
	SRR8316899	Complete white stage	11.603
	SRR8316903	Complete white stage	5.432
	SRR8316902	Silver flowering stage	3.957
	SRR8316904	Silver flowering stage	4.697
	SRR8316905	Silver flowering stage	1.457
	SRR8316906	Gold flowering stage	11.803
	SRR8316907	Gold flowering stage	7.968
	SRR8316908	Gold flowering stage	11.043
SRP132670	SRR6706286	Control	7.819
	SRR6706287	Light intensity 50%	6.794
	SRR6706288	Light intensity 20%	7.586
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.706
	CNS0095593	Slightly white alabastrum(diploid) 2	4.719
	CNS0095594	Slightly white alabastrum(diploid) 3	4.124
	CNS0095595	Whole white alabastrum(diploid) 2	4.980
	CNS0095596	Whole white alabastrum(diploid) 3	2.077
	CNS0095597	Whole white alabastrum(diploid) 4	4.680
	CNS0095598	Silvery flower (diploied) 1	6.585
	CNS0095599	Silvery flower (diploied) 2	6.454
	CNS0095600	Silvery flower (diploied) 3	9.226
	CNS0095601	Golden flower (diploid) 1	8.276
	CNS0095602	Golden flower (diploid) 2	10.811
	CNS0095603	Golden flower (diploid) 3	11.163
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.436
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.765
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.871
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.820
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.176
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.698
	CNS0095610	Silvery flower (tetraploid) 1	9.282
	CNS0095611	Silvery flower (tetraploid) 2	7.437
	CNS0095612	Silvery flower (tetraploid) 3	9.579
	CNS0095613	Golden flower (tetraploid) 1	2.944
	CNS0095614	Golden flower (tetraploid) 2	5.859
	CNS0095615	Golden flower (tetraploid) 3	3.327
CRA001975	CRR073297	Stem 1	8.148
	CRR073298	Stem 2	7.659
	CRR073299	Stem 3	6.370
	CRR073300	Leaf 1	5.724
	CRR073301	Leaf 2	4.789
	CRR073302	Leaf 3	5.226
	CRR073303	Juvenile bud 1	5.503
	CRR073304	Juvenile bud 2	4.852
	CRR073305	Juvenile bud 3	2.889
	CRR073306	Third green 1	0.533
	CRR073307	Third green 2	0.875
	CRR073308	Third green 3	2.273
	CRR073309	Second white 1	2.514
	CRR073310	Second white 2	2.391
	CRR073311	Second white 3	3.185
	CRR073312	Silver flowering 1	1.069
	CRR073313	Silver flowering 2	0.921
	CRR073314	Silver flowering 3	0.321
	CRR073315	Gold flowering 1	3.415
	CRR073316	Gold flowering 2	5.807
	CRR073317	Gold flowering 3	4.292
	CRR073318	Tawny withering 1	5.400
	CRR073319	Tawny withering 2	3.861
	CRR073320	Tawny withering 3	6.116