Detail information of GWHGAAZE021467


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI16985.37.59806E-28unnamed protein product [Vitis vinifera]
trEMBLtr|B9IHD0|B9IHD0_POPTR2E-24Uncharacterized protein {ECO:0000313|EMBL:EEF04944.2}
TAIR10AT4G08980.50.00007F-BOX WITH WD-40 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5393753753938638-
GWHAAZE00000006mRNA5393753753938638-
GWHAAZE00000006exon5393844153938638-
GWHAAZE00000006exon5393753753937794-
GWHAAZE00000006five_prime_UTR5393844153938638-
GWHAAZE00000006five_prime_UTR5393779253937794-
GWHAAZE00000006CDS5393753753937791-
Transcript Sequence

Network for GWHGAAZE021467

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.095
SRR3591706second leaf1.326
SRR3591707mature leaf0.000
SRR3591708Shoot apex4.110
SRR3591709Stem10.997
SRR3591710White floral bud3.606
SRR3591711White flower2.296
SRR3591712Green floral bud6.496
SRR3591713Yellow flower0.426
SRP173429 SRR8316895Juvenile bud stage 0.931
SRR8316896Juvenile bud stage 1.854
SRR8316897Juvenile bud stage 0.264
SRR8316894Third green stage 1.020
SRR8316900Third green stage 1.896
SRR8316901Third green stage 1.360
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.538
SRR8316903Complete white stage 0.335
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.401
SRR8316908Gold flowering stage 0.020
SRP132670SRR6706286Control0.215
SRR6706287Light intensity 50%0.242
SRR6706288Light intensity 20%0.399
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.362
CNS0095593Slightly white alabastrum(diploid) 20.730
CNS0095594Slightly white alabastrum(diploid) 31.114
CNS0095595Whole white alabastrum(diploid) 20.918
CNS0095596Whole white alabastrum(diploid) 31.384
CNS0095597Whole white alabastrum(diploid) 40.541
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.094
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.869
CNS0095605Slightly white alabastrum(tetraploid) 20.593
CNS0095606Slightly white alabastrum(tetraploid) 32.077
CNS0095607Whole white alabastrum(tetraploid) 10.318
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.275
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.347
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.187
CRR073298Stem 21.143
CRR073299Stem 30.479
CRR073300Leaf 10.492
CRR073301Leaf 20.239
CRR073302Leaf 30.273
CRR073303Juvenile bud 10.014
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.207
CRR073306Third green 10.011
CRR073307Third green 20.010
CRR073308Third green 30.460
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.711
CRR073319Tawny withering 20.210
CRR073320Tawny withering 31.048