Gene detail

Detail information of GWHGAAZE021485

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002535506.1	1.7654E-123	aldo/keto reductase, putative [Ricinus communis]
COG	YP_007144556.1	6E-88	pyridoxine 4-dehydrogenase
Swissprot	tr\|P49249\|IN22_MAIZE	3E-123	IN2-2 protein
trEMBL	tr\|B9TB87\|B9TB87_RICCO	7E-124	Aldo/keto reductase, putative {ECO:0000313\|EMBL:EEF26877.1}
TAIR10	AT1G60710.1	9E-96	NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	54704799	54706892	+
GWHAAZE00000006	mRNA	54704799	54706892	+
GWHAAZE00000006	exon	54704799	54705023	+
GWHAAZE00000006	exon	54705472	54705675	+
GWHAAZE00000006	exon	54706175	54706347	+
GWHAAZE00000006	exon	54706712	54706892	+
GWHAAZE00000006	CDS	54704799	54705023	+
GWHAAZE00000006	CDS	54705472	54705675	+
GWHAAZE00000006	CDS	54706175	54706347	+
GWHAAZE00000006	CDS	54706712	54706892	+

Transcript Sequence
>GWHTAAZE021509 GAGAGAGAGAGAATGGCAGGAGTGAAGAAGGTGAAGTTGGGTTCCCAAGGACTAGTGGTATCAAAGCAGGGATTGGGTTGTATGAGTATGTCTCAATTCTTCGGACCACCCAAACCCGATGATGAAATGATACCTTTGATTCGCCATGCCATAGACAGTGGAGTCACCTTCCTTGATACCTCTGATCTCTATGGTCCTCACACCAATGAAACCCTTCTTGGCAAGGCATTAAAGGGGGGGTACAGAGAGAAGGTGCAATTGGCCTCAAAATTCGGTGTGGTGTCGTTCACCGACGGAAAAATGACCGTGTGCGGTGAACCGGCGTACGTTCGGGCATGTTGCGAAGCTAGCTTGAAGCGGCTCGAAGTTGATTGCATCGATCTCTATTACCTGCATCGCGTTGATGCTTCTATTCCCATTGAAATCACGATGGGTGCATTGAAGAAGCTAGTGGAAGAGGGCAAAATAAAATATGTAGGTTTATCTGAAGTACCATCAGAGACCATAAGAAGGGCACATGCTGTTCATCCACTCACTGCCATTCAGCTTGAATGGTCCTTATGGACTAAAGATGCTGAAGATGACATTGTTCCTACTTGCAGAGAGCTTGGAATTGGGATTGTACCATACAGTCCACTAGGACAAGGATTCTTCTGTGTTGGACCAAAAATTGTTGATGGCATGACGGATGATGACACCAGGAGGGTAACTAATTTGTCACATTTAGTACCATTTTCTTGTTATATACTTGTTAAAAGTCCTGGAGATAATACAAATATATAG

Network for GWHGAAZE021485

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0310

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.22	Aldo_ket_red	25	218	3.50E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.008
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.049
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.028
	SRR8316901	Third green stage	0.044
	SRR8316898	Complete white stage	0.137
	SRR8316899	Complete white stage	0.396
	SRR8316903	Complete white stage	0.713
	SRR8316902	Silver flowering stage	2.782
	SRR8316904	Silver flowering stage	1.362
	SRR8316905	Silver flowering stage	0.042
	SRR8316906	Gold flowering stage	0.013
	SRR8316907	Gold flowering stage	0.926
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.254
	SRR6706287	Light intensity 50%	0.039
	SRR6706288	Light intensity 20%	0.107
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.030
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.056
	CNS0095596	Whole white alabastrum(diploid) 3	0.011
	CNS0095597	Whole white alabastrum(diploid) 4	0.010
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	8.270
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.515
	CNS0095603	Golden flower (diploid) 3	0.555
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.332
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.039
	CNS0095610	Silvery flower (tetraploid) 1	0.197
	CNS0095611	Silvery flower (tetraploid) 2	0.086
	CNS0095612	Silvery flower (tetraploid) 3	0.003
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.129
	CNS0095615	Golden flower (tetraploid) 3	0.081
CRA001975	CRR073297	Stem 1	0.186
	CRR073298	Stem 2	0.055
	CRR073299	Stem 3	0.390
	CRR073300	Leaf 1	0.009
	CRR073301	Leaf 2	0.143
	CRR073302	Leaf 3	0.066
	CRR073303	Juvenile bud 1	0.045
	CRR073304	Juvenile bud 2	0.176
	CRR073305	Juvenile bud 3	0.070
	CRR073306	Third green 1	0.282
	CRR073307	Third green 2	0.612
	CRR073308	Third green 3	0.670
	CRR073309	Second white 1	0.080
	CRR073310	Second white 2	0.011
	CRR073311	Second white 3	0.059
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.071
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.392
	CRR073319	Tawny withering 2	0.272
	CRR073320	Tawny withering 3	0.083