Detail information of GWHGAAZE021504


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002518086.10conserved hypothetical protein [Ricinus communis]
COGYP_003709124.10.000002hypothetical protein wcw_0751
Swissprottr|Q8W4N3|UBP2_ARATH4E-130Ubiquitin carboxyl-terminal hydrolase 2
trEMBLtr|B9RWG7|B9RWG7_RICCO0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}
TAIR10AT1G04860.13E-104ubiquitin-specific protease 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5525564855262830-
GWHAAZE00000006mRNA5525564855262830-
GWHAAZE00000006exon5526146355262830-
GWHAAZE00000006exon5526006655261093-
GWHAAZE00000006exon5525564855255888-
GWHAAZE00000006CDS5526146355262830-
GWHAAZE00000006CDS5526006655261093-
GWHAAZE00000006CDS5525564855255888-
Transcript Sequence

Network for GWHGAAZE021504

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02148.20zf-UBP701612.70E-16
PF00443.30UCH2278759.60E-48
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUSP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006511biological_processubiquitin-dependent protein catabolic process
GO:0016579biological_processprotein deubiquitination
GO:0036459molecular_functionthiol-dependent ubiquitinyl hydrolase activity
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.757
SRR3591706second leaf4.811
SRR3591707mature leaf4.914
SRR3591708Shoot apex5.949
SRR3591709Stem7.960
SRR3591710White floral bud12.631
SRR3591711White flower18.236
SRR3591712Green floral bud13.140
SRR3591713Yellow flower11.011
SRP173429 SRR8316895Juvenile bud stage 5.890
SRR8316896Juvenile bud stage 7.803
SRR8316897Juvenile bud stage 3.462
SRR8316894Third green stage 3.511
SRR8316900Third green stage 8.426
SRR8316901Third green stage 10.109
SRR8316898Complete white stage 4.583
SRR8316899Complete white stage 12.678
SRR8316903Complete white stage 8.817
SRR8316902Silver flowering stage6.856
SRR8316904Silver flowering stage8.425
SRR8316905Silver flowering stage4.380
SRR8316906Gold flowering stage 10.736
SRR8316907Gold flowering stage 13.303
SRR8316908Gold flowering stage 13.789
SRP132670SRR6706286Control7.110
SRR6706287Light intensity 50%7.596
SRR6706288Light intensity 20%8.137
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.004
CNS0095593Slightly white alabastrum(diploid) 29.021
CNS0095594Slightly white alabastrum(diploid) 36.012
CNS0095595Whole white alabastrum(diploid) 25.843
CNS0095596Whole white alabastrum(diploid) 37.568
CNS0095597Whole white alabastrum(diploid) 45.930
CNS0095598Silvery flower (diploied) 18.805
CNS0095599Silvery flower (diploied) 27.255
CNS0095600Silvery flower (diploied) 313.145
CNS0095601Golden flower (diploid) 16.205
CNS0095602Golden flower (diploid) 210.962
CNS0095603Golden flower (diploid) 310.589
CNS0095604Slightly white alabastrum(tetraploid) 16.775
CNS0095605Slightly white alabastrum(tetraploid) 26.333
CNS0095606Slightly white alabastrum(tetraploid) 311.632
CNS0095607Whole white alabastrum(tetraploid) 13.775
CNS0095608Whole white alabastrum(tetraploid) 24.307
CNS0095609Whole white alabastrum(tetraploid) 37.758
CNS0095610Silvery flower (tetraploid) 112.897
CNS0095611Silvery flower (tetraploid) 210.256
CNS0095612Silvery flower (tetraploid) 310.592
CNS0095613Golden flower (tetraploid) 17.250
CNS0095614Golden flower (tetraploid) 28.978
CNS0095615Golden flower (tetraploid) 37.031
CRA001975CRR073297Stem 18.340
CRR073298Stem 28.401
CRR073299Stem 36.929
CRR073300Leaf 110.878
CRR073301Leaf 210.224
CRR073302Leaf 39.055
CRR073303Juvenile bud 19.515
CRR073304Juvenile bud 28.040
CRR073305Juvenile bud 312.953
CRR073306Third green 18.357
CRR073307Third green 26.343
CRR073308Third green 38.461
CRR073309Second white 17.746
CRR073310Second white 211.377
CRR073311Second white 310.150
CRR073312Silver flowering 16.486
CRR073313Silver flowering 24.748
CRR073314Silver flowering 36.907
CRR073315Gold flowering 14.834
CRR073316Gold flowering 210.013
CRR073317Gold flowering 33.891
CRR073318Tawny withering 110.247
CRR073319Tawny withering 27.706
CRR073320Tawny withering 39.604