Detail information of GWHGAAZE021517


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009596414.18.3209E-140PREDICTED: 60S ribosomal protein L13a-4 [Nicotiana tomentosiformis]
COGNP_615560.23E-2250S ribosomal protein L13
Swissprottr|Q9FKC0|R13A4_ARATH3E-13860S ribosomal protein L13a-4
trEMBLtr|M1ACS2|M1ACS2_SOLTU6E-140Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400019917}
TAIR10AT5G48760.27E-109Ribosomal protein L13 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5588588155889519-
GWHAAZE00000006mRNA5588588155889519-
GWHAAZE00000006exon5588588155886213-
GWHAAZE00000006exon5588713455887221-
GWHAAZE00000006exon5588731955887435-
GWHAAZE00000006exon5588922055889519-
GWHAAZE00000006five_prime_UTR5588949255889519-
GWHAAZE00000006CDS5588922055889491-
GWHAAZE00000006CDS5588731955887435-
GWHAAZE00000006CDS5588713455887221-
GWHAAZE00000006CDS5588607055886213-
GWHAAZE00000006three_prime_UTR5588588155886069-
Transcript Sequence

Network for GWHGAAZE021517

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00572.19Ribosomal_L13111155.00E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02872RP-L13Ae, RPL13A Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf102.089
SRR3591706second leaf45.199
SRR3591707mature leaf28.426
SRR3591708Shoot apex129.592
SRR3591709Stem48.157
SRR3591710White floral bud45.991
SRR3591711White flower76.907
SRR3591712Green floral bud93.487
SRR3591713Yellow flower63.182
SRP173429 SRR8316895Juvenile bud stage 50.963
SRR8316896Juvenile bud stage 68.389
SRR8316897Juvenile bud stage 44.843
SRR8316894Third green stage 28.765
SRR8316900Third green stage 87.437
SRR8316901Third green stage 82.905
SRR8316898Complete white stage 18.085
SRR8316899Complete white stage 70.892
SRR8316903Complete white stage 33.875
SRR8316902Silver flowering stage29.139
SRR8316904Silver flowering stage31.485
SRR8316905Silver flowering stage15.419
SRR8316906Gold flowering stage 59.873
SRR8316907Gold flowering stage 69.078
SRR8316908Gold flowering stage 75.081
SRP132670SRR6706286Control77.899
SRR6706287Light intensity 50%76.585
SRR6706288Light intensity 20%85.985
CNP0000432CNS0095592Slightly white alabastrum(diploid) 191.365
CNS0095593Slightly white alabastrum(diploid) 2109.425
CNS0095594Slightly white alabastrum(diploid) 391.182
CNS0095595Whole white alabastrum(diploid) 273.727
CNS0095596Whole white alabastrum(diploid) 388.139
CNS0095597Whole white alabastrum(diploid) 455.476
CNS0095598Silvery flower (diploied) 164.734
CNS0095599Silvery flower (diploied) 263.346
CNS0095600Silvery flower (diploied) 343.705
CNS0095601Golden flower (diploid) 149.456
CNS0095602Golden flower (diploid) 244.409
CNS0095603Golden flower (diploid) 343.466
CNS0095604Slightly white alabastrum(tetraploid) 193.569
CNS0095605Slightly white alabastrum(tetraploid) 299.109
CNS0095606Slightly white alabastrum(tetraploid) 3130.971
CNS0095607Whole white alabastrum(tetraploid) 147.931
CNS0095608Whole white alabastrum(tetraploid) 246.838
CNS0095609Whole white alabastrum(tetraploid) 392.378
CNS0095610Silvery flower (tetraploid) 160.643
CNS0095611Silvery flower (tetraploid) 255.170
CNS0095612Silvery flower (tetraploid) 336.149
CNS0095613Golden flower (tetraploid) 136.837
CNS0095614Golden flower (tetraploid) 252.993
CNS0095615Golden flower (tetraploid) 331.841
CRA001975CRR073297Stem 166.663
CRR073298Stem 267.178
CRR073299Stem 372.908
CRR073300Leaf 164.511
CRR073301Leaf 266.136
CRR073302Leaf 375.332
CRR073303Juvenile bud 170.522
CRR073304Juvenile bud 240.434
CRR073305Juvenile bud 353.479
CRR073306Third green 116.336
CRR073307Third green 218.084
CRR073308Third green 318.913
CRR073309Second white 117.572
CRR073310Second white 219.299
CRR073311Second white 317.821
CRR073312Silver flowering 118.617
CRR073313Silver flowering 218.136
CRR073314Silver flowering 320.561
CRR073315Gold flowering 124.056
CRR073316Gold flowering 230.871
CRR073317Gold flowering 325.878
CRR073318Tawny withering 179.439
CRR073319Tawny withering 265.305
CRR073320Tawny withering 390.461