Gene detail

Detail information of GWHGAAZE021518

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011045659.1	0	PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
Swissprot	tr\|Q56YJ8\|FAMA_ARATH	5E-144	Transcription factor FAMA
trEMBL	tr\|B9GFX7\|B9GFX7_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE84979.2}
TAIR10	AT3G24140.1	3E-103	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	55898982	55901391	+
GWHAAZE00000006	mRNA	55898982	55901391	+
GWHAAZE00000006	exon	55898982	55899647	+
GWHAAZE00000006	exon	55899891	55900328	+
GWHAAZE00000006	exon	55901217	55901391	+
GWHAAZE00000006	CDS	55898982	55899647	+
GWHAAZE00000006	CDS	55899891	55900328	+
GWHAAZE00000006	CDS	55901217	55901306	+
GWHAAZE00000006	three_prime_UTR	55901307	55901391	+

Transcript Sequence
>GWHTAAZE021542 GCAAATTTACCAGGTAATTTTCATGGAGTTGAGTATTCCATTGACCACCAACATCAACAACAATTCATGAAGCCGCGGACCGGTGAAACCTCAGGCAACAATAGCAACCAAATGATCGACTACATGCTCAACAATCCTCAACCGCAACACCACAATATGTCTAGTGGCTTTTGCAGTTCGTCCTCTTTAGACAAGTTGAGCTTCGCGGACGTGATGCAATTCGCAGATTTTGGTCCAAAACTGGCGTTGAACCAGACCAAAGCGGCAGAAGAAGACACTGGGATCGATCCGGTCTACTTCTTGAAGTTCCCGGTATTGAACGAGAGGTTACAAGATGAGTCTCTCATGGTTAATCCTCAAGATGTTGGGGAGGATGAAGAGAGGTCAATATTGAAAGGAGTGAGTGGGGAGGATAAGGAGAGAGAAGATGAAGCTAGGGTTTCTGAGAGTACTTCGGTGCAAATTAGGTTTCTTGGTGATGATCTTCAGAAAAGTCCGATAAATGACGCAAAGAACAAGAGGAAGAGGCCGAGAACTACAAAGACGAGCGAGGAGGTCGAGAGCCAGAGGATGACTCACATCGCAGTTGAGAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGAGTTCTGAGGTCCCTCATGCCTGGCTCATACGTACAAAGGGGGGATCAAGCTTCAATCATAGGTGGAGCCATTGAGTTTGTGAGAGAATTGGAGCAACTCTTGCAATGCCTCGAGTCACAAAAACGGCGAAGGCTTTATGGCGATGCACCTAGGCCAATGGGAGGAGATTCATCGTCGCTTGGAGCTCAACAGCCTCAACCACAACCATTGATCTTTTCTCCGATGGCGCCACTTGGGGAGGATCAGATAGAACTAATCGACAATGGGTTGCGCGAGGAAACAGCGGAGAGCAAGTCATGTTTGGCCGACGTGGAAGTGAGGCTATTAGGGTTTGATGCAATGATAAAGATCCTTTGTAGGAGGAGGCCAGGCCAGCTTATTAAGATGATAGCTGCACTTGAAGATTTGCAGCTTAATATTCTTCACACAAACATCACCACTATTGAACAAACTGTCCTCTATTCTTTCAATGTTAAGGTAAATAGCGAAACGAGGTTCACAGCTGAAGATATAGCAAACTCCGTCCAACAGATACTCACTTTTATCCATGCAAACAGCACCGTATGAAAAGTAGTAGTCTTTTATATTTTTTTCACTTCAAAATATAACTTAATGTAATTTCTTTTTCTACATATTCTTTTTATCATCGTAA

Network for GWHGAAZE021518

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	189	240	8.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.147
	SRR3591706	second leaf	8.716
	SRR3591707	mature leaf	8.530
	SRR3591708	Shoot apex	7.031
	SRR3591709	Stem	0.150
	SRR3591710	White floral bud	0.434
	SRR3591711	White flower	0.416
	SRR3591712	Green floral bud	0.317
	SRR3591713	Yellow flower	0.233
SRP173429	SRR8316895	Juvenile bud stage	0.881
	SRR8316896	Juvenile bud stage	0.946
	SRR8316897	Juvenile bud stage	0.236
	SRR8316894	Third green stage	0.299
	SRR8316900	Third green stage	0.364
	SRR8316901	Third green stage	0.319
	SRR8316898	Complete white stage	0.188
	SRR8316899	Complete white stage	0.465
	SRR8316903	Complete white stage	0.065
	SRR8316902	Silver flowering stage	0.322
	SRR8316904	Silver flowering stage	0.337
	SRR8316905	Silver flowering stage	0.073
	SRR8316906	Gold flowering stage	0.443
	SRR8316907	Gold flowering stage	0.097
	SRR8316908	Gold flowering stage	0.394
SRP132670	SRR6706286	Control	0.244
	SRR6706287	Light intensity 50%	0.336
	SRR6706288	Light intensity 20%	0.431
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.306
	CNS0095593	Slightly white alabastrum(diploid) 2	0.044
	CNS0095594	Slightly white alabastrum(diploid) 3	0.624
	CNS0095595	Whole white alabastrum(diploid) 2	0.400
	CNS0095596	Whole white alabastrum(diploid) 3	0.150
	CNS0095597	Whole white alabastrum(diploid) 4	0.180
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.067
	CNS0095600	Silvery flower (diploied) 3	0.247
	CNS0095601	Golden flower (diploid) 1	0.073
	CNS0095602	Golden flower (diploid) 2	0.117
	CNS0095603	Golden flower (diploid) 3	0.171
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.019
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.462
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.251
	CNS0095610	Silvery flower (tetraploid) 1	0.115
	CNS0095611	Silvery flower (tetraploid) 2	0.047
	CNS0095612	Silvery flower (tetraploid) 3	0.261
	CNS0095613	Golden flower (tetraploid) 1	0.087
	CNS0095614	Golden flower (tetraploid) 2	0.243
	CNS0095615	Golden flower (tetraploid) 3	0.182
CRA001975	CRR073297	Stem 1	1.173
	CRR073298	Stem 2	0.991
	CRR073299	Stem 3	0.483
	CRR073300	Leaf 1	0.341
	CRR073301	Leaf 2	0.297
	CRR073302	Leaf 3	0.078
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.035
	CRR073307	Third green 2	0.045
	CRR073308	Third green 3	0.292
	CRR073309	Second white 1	0.087
	CRR073310	Second white 2	0.117
	CRR073311	Second white 3	0.387
	CRR073312	Silver flowering 1	0.091
	CRR073313	Silver flowering 2	0.166
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.251
	CRR073316	Gold flowering 2	2.991
	CRR073317	Gold flowering 3	1.964
	CRR073318	Tawny withering 1	0.298
	CRR073319	Tawny withering 2	0.058
	CRR073320	Tawny withering 3	0.164