Gene detail

Detail information of GWHGAAZE021537

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP21417.1	5.05139E-38	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	1E-19	F-box protein CPR30
trEMBL	tr\|A0A068VLD6\|A0A068VLD6_COFCA	2E-38	Coffea canephora DH200=94 genomic scaffold, scaffold_3952 {ECO:0000313\|EMBL:CDP21417.1}
TAIR10	AT4G12560.2	4E-18	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	56275641	56277163	+
GWHAAZE00000006	mRNA	56275641	56277163	+
GWHAAZE00000006	exon	56275641	56276741	+
GWHAAZE00000006	exon	56277122	56277163	+
GWHAAZE00000006	CDS	56275641	56276741	+
GWHAAZE00000006	CDS	56277122	56277163	+

Transcript Sequence
>GWHTAAZE021561 ATGATGGAATGGGAATTGCCTCAAGTACCAGACGAAATCATTGATAACATACTCTTGAGACTTCCCGCTAAGTCTCTTTTGCGATTTAAATGCGTTTCCAAACGCTGGCTTTCTACAATCTCAGATCCCAATTTTCATCATGAGAAAGAGTATGAGTCCATTCTCGTTGCGGAATTCTCACATACTCCGACTAAGACGGTATCTTTTTATTCAATAGATGATGATGGCAGTAAAGTTGTTAAGGAATCTTTCACTTTATTGTCTAACAACATGATTACTGGCATGTCGAATTCCTGTCACGGATTATTTATTATACGCTTTGGTGATTCCTATTTCTTATTCAATCCATCAACTCGTTATTTCGCTAAGGTTTTAAGCTGTCTCCATGAGTTTGATAGAATCGTGGGACTTTGTTACGACGAGTATACTAAGGATTATAAGGTTGTTCAGCTTCTATATTATGGTCCGGTTACATACGTAGTCGTTGCAGCTAGTTTGAAAAGTAAACGGTGGGCCCCAGTTGGCTTCCCTTTCAATGCTGCTTCACCTTGCCAAGGGCCGGTACTAAATGGGAGGTTGCATTGGACCGTCCACGAGAAAATCGTACGCTATGATCCACATGCGAATGCATTCGAGGAGTTCCCGTCACCTACCGGCAATGCGAGTTCAATATTCTGTTTGGGAGTTTTAGGTGGATGTCTTTGCATGGCTAGACGGGACAGTGAAAGATACGTTGAAGAGAAGTTTGAAGTGCTGACAATGAAAGAATACGGGGTGGAAGAATCTTGGACAACCCTGTTCTTTATTATATCATCGGATTTCGAGCCGATTCTTTTTTCTAAGAATCTTGAGGTTTTCCTCAAGAAAAGTGTGAGGAAATTTTGGTCTACGAGTATTTTAAGAAAAAGAAAAGGTTGGTCTTCGAATTCCAGCTCGTCTTTTTTAACCAAGAATGGTGAGATTCTATTATTAGGAAAGGAAAACATGTCTCGAAAATTATTCGCCTACAATTGGAGAAAAAACACAACTACTGACTTGGATACGGCAAGCAATGACAATTGGTGGGGTGCCGTTTCATTTGTGCAAAATCTAACTTCACCGCGATGTTTAGATGCTCCGTTTGTAGAGGCGCTTGGTGTTTAA

Network for GWHGAAZE021537

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	7	49	3.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.064
	SRR3591706	second leaf	0.075
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.128
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.244
	SRR8316896	Juvenile bud stage	0.575
	SRR8316897	Juvenile bud stage	0.280
	SRR8316894	Third green stage	0.204
	SRR8316900	Third green stage	0.019
	SRR8316901	Third green stage	0.348
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.090
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.086
	SRR6706287	Light intensity 50%	0.079
	SRR6706288	Light intensity 20%	0.053
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.585
	CNS0095593	Slightly white alabastrum(diploid) 2	0.303
	CNS0095594	Slightly white alabastrum(diploid) 3	0.268
	CNS0095595	Whole white alabastrum(diploid) 2	0.199
	CNS0095596	Whole white alabastrum(diploid) 3	0.183
	CNS0095597	Whole white alabastrum(diploid) 4	0.387
	CNS0095598	Silvery flower (diploied) 1	0.051
	CNS0095599	Silvery flower (diploied) 2	0.067
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.033
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.868
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.817
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.178
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.896
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.697
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.961
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.325
	CNS0095612	Silvery flower (tetraploid) 3	0.371
	CNS0095613	Golden flower (tetraploid) 1	0.097
	CNS0095614	Golden flower (tetraploid) 2	0.044
	CNS0095615	Golden flower (tetraploid) 3	0.074
CRA001975	CRR073297	Stem 1	0.254
	CRR073298	Stem 2	0.108
	CRR073299	Stem 3	0.188
	CRR073300	Leaf 1	0.124
	CRR073301	Leaf 2	0.115
	CRR073302	Leaf 3	0.058
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.047
	CRR073305	Juvenile bud 3	0.075
	CRR073306	Third green 1	0.074
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.021
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000