Gene detail

Detail information of GWHGAAZE021557

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP21417.1	2.34119E-25	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FGY4\|FB341_ARATH	0.0000004	F-box protein At5g49610
trEMBL	tr\|A0A068VLD6\|A0A068VLD6_COFCA	9E-26	Coffea canephora DH200=94 genomic scaffold, scaffold_3952 {ECO:0000313\|EMBL:CDP21417.1}
TAIR10	AT5G49610.1	0.0000009	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	56762796	56763946	+
GWHAAZE00000006	mRNA	56762796	56763946	+
GWHAAZE00000006	exon	56762796	56763077	+
GWHAAZE00000006	exon	56763230	56763946	+
GWHAAZE00000006	CDS	56762796	56763077	+
GWHAAZE00000006	CDS	56763230	56763946	+

Transcript Sequence
>GWHTAAZE021581 ATGGAATCACAATTAGCAGGAACAGAATCACAATTCCAGCAAAGGAAAATAGTGAAACAAGAAAGATTGACGGAATCGGAATTACCAGACGAAATCATTGACGAGATACTCTCCAGACTACCACTTCAATCTCTTTTCCAATTTAAGTGCGTTTGCAAACGCTGGCTTTCTACGATTTCTAATCCCAATTTTCATCAAAAGACAGAGATTGAGTCAATTCTTGTTGTGGAATCATCAAAAGACAGAGACAGAGATTTGTTACCAAATCGTTCTCTGTACCATAACAATGTTGTCACGGCCGGGCTTTGTTACGACACTTATACTAATGGTTACAAGGCTGTAATCAGGTTTGTGCACCGTTTTGGGCATGGCAGAGTTGTCGTGCTAGCTAGTTTAAAGACAAAACGGTGTGTCCAGATTAATTTCCCTTTCGATGTTACTTCTACAAAGGCTGGTCCAGTAGAGAATGGCATGATGCATTGGACCGTTAACGATAGCGTCAATAATCGGCGGTCCAAAAAAATTATATACTTTGACCCGTCTAGAAATTTATTCGAGGAGTTCCCATCCCCGCCATCACAATTTGGGGGTAAAAACGCTATTTTTCATTTGGGAGTTTCAAGAGGATATCTTTGTATGGTTAGATTGTCTCGTTTCAATATTGAAGTATTGATAATGAAGAAATACGGTATTAGAGAATCTTGGACGTCTCTGACTACTATGCCACTACCGTCTCATCTGTTTCTGCCGTTTATTTTTACAAATAATGGTGATATCATGATTGTACAAAAGAAAAACAAGTCCCAAGTATTGGCAGACAATCCAGAAAAAAAGACCACGAGGATCTTCGATTTGCCGAATGTCGAGAACTTGTTGTTGGATGGGGTTTCAATAGTTCAAAATATAGCTTGGCCGAGTGGCTATGAGTGGGATGAGATTCGACACAAGAATCATGGGGTGGAGATGGAGTGGCTGAAAACGGAAGATAATTTTGTCTAA

Network for GWHGAAZE021557

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	26	67	7.20E-12
PF07734.14	FBA_1	156	280	1.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.174
	SRR8316896	Juvenile bud stage	0.111
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.008
	SRR8316900	Third green stage	0.021
	SRR8316901	Third green stage	0.200
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.039
SRP132670	SRR6706286	Control	0.049
	SRR6706287	Light intensity 50%	0.013
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.085
	CNS0095593	Slightly white alabastrum(diploid) 2	0.074
	CNS0095594	Slightly white alabastrum(diploid) 3	0.714
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.006
	CNS0095597	Whole white alabastrum(diploid) 4	0.050
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.060
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.063
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.176
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.014
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.120
	CRR073300	Leaf 1	0.047
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.043
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.083
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000