Gene detail

Detail information of GWHGAAZE021568

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006418685.1	6.0914E-99	hypothetical protein EUTSA_v10002667mg [Eutrema salsugineum]
COG	YP_006773268.1	4E-14	50S ribosomal protein L13
Swissprot	tr\|Q9LRX8\|R13A2_ARATH	1E-98	60S ribosomal protein L13a-2
trEMBL	tr\|V4MXE8\|V4MXE8_EUTSA	2E-99	Uncharacterized protein {ECO:0000313\|EMBL:ESQ37121.1}
TAIR10	AT5G48760.2	9E-73	Ribosomal protein L13 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57011624	57015187	+
GWHAAZE00000006	mRNA	57011624	57015187	+
GWHAAZE00000006	exon	57011624	57011895	+
GWHAAZE00000006	exon	57012131	57012179	+
GWHAAZE00000006	exon	57013690	57013754	+
GWHAAZE00000006	exon	57013852	57013939	+
GWHAAZE00000006	exon	57014858	57015187	+
GWHAAZE00000006	CDS	57011624	57011895	+
GWHAAZE00000006	CDS	57012131	57012179	+
GWHAAZE00000006	CDS	57013690	57013754	+
GWHAAZE00000006	CDS	57013852	57013939	+
GWHAAZE00000006	CDS	57014858	57014938	+
GWHAAZE00000006	three_prime_UTR	57014939	57015187	+

Transcript Sequence
>GWHTAAZE021592 ATGGTATCTGGGTCTGGGATATGTGCAAGGAGGGTGGTGGTGGATGCAAGGCACCACATGCTGGGGAGACTTGCCTCGATATTGGCAAAGGAATTGTTAAATGGACAGAAAGTAGTGGTGGTGAGGTGCGAGGAGATTTGCCTCTCCGGTGGACTCGTAAGGCAGAAGATGAAGTACCTCAGATTTCTTCGTAAGCGGATGAACACCAAGCCCTCTCATGGTCCCATTCATTTCCGAGCCCCGGCTAAGATCCTCTGGAGGACTATTCGTGGTGTTGTATATTTTTTAAGATTGATGAATGATTGGGGCGATGATGATTGGGTTTATGAGGGAGTCCCACCACCATATGACAAGATAAAGAGGATGGTCATACCAGATGCCCTGAAGGTTCTGAGGCTTCAAGCCGGACACAAGTACTGTTTGTTGGGCAGGCTTTCATCCGAAGTTGGATGGAACCATTATGATACCATCAAGGAGCTTGAGATTAAGAGGAAGGAAAGGCTCAAATTGTGTATGAGAGGAAGAACAGTTGACAAAACTGAGGTTGAAGGCTGAAAAGGCTGCTGAGGAGAAGCTCGGCCCCCAACTTGCTGTAATTGCCCCAATCAAGTACTGAGAAGTAGCAGCTTAGTTTTCTTTTTACAACTGGCAATTTTGTTGGAGTATCGTGTATCAGTTAATTTTGTTTCTTTTAGACGCTTTTCTAGATTGAGCAGGTTATTTTTGTGGCTAAATCTCTCAACAGGAATTATGTTATACATGCGTGACTTTGTTTTCAAGTTTAAGACATGATTTTGTGTTATC

Network for GWHGAAZE021568

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00572.19	Ribosomal_L13	11	93	9.20E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02872	RP-L13Ae, RPL13A	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0015934	cellular_component	large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.522
	SRR3591706	second leaf	13.098
	SRR3591707	mature leaf	6.402
	SRR3591708	Shoot apex	38.895
	SRR3591709	Stem	13.076
	SRR3591710	White floral bud	13.677
	SRR3591711	White flower	22.277
	SRR3591712	Green floral bud	23.527
	SRR3591713	Yellow flower	15.815
SRP173429	SRR8316895	Juvenile bud stage	10.700
	SRR8316896	Juvenile bud stage	14.216
	SRR8316897	Juvenile bud stage	2.362
	SRR8316894	Third green stage	4.817
	SRR8316900	Third green stage	17.406
	SRR8316901	Third green stage	19.980
	SRR8316898	Complete white stage	3.187
	SRR8316899	Complete white stage	16.477
	SRR8316903	Complete white stage	8.161
	SRR8316902	Silver flowering stage	8.535
	SRR8316904	Silver flowering stage	6.689
	SRR8316905	Silver flowering stage	3.022
	SRR8316906	Gold flowering stage	10.192
	SRR8316907	Gold flowering stage	10.388
	SRR8316908	Gold flowering stage	5.163
SRP132670	SRR6706286	Control	6.552
	SRR6706287	Light intensity 50%	6.074
	SRR6706288	Light intensity 20%	6.470
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.597
	CNS0095593	Slightly white alabastrum(diploid) 2	30.069
	CNS0095594	Slightly white alabastrum(diploid) 3	25.797
	CNS0095595	Whole white alabastrum(diploid) 2	22.062
	CNS0095596	Whole white alabastrum(diploid) 3	23.822
	CNS0095597	Whole white alabastrum(diploid) 4	16.252
	CNS0095598	Silvery flower (diploied) 1	16.056
	CNS0095599	Silvery flower (diploied) 2	18.859
	CNS0095600	Silvery flower (diploied) 3	11.247
	CNS0095601	Golden flower (diploid) 1	13.246
	CNS0095602	Golden flower (diploid) 2	10.524
	CNS0095603	Golden flower (diploid) 3	9.790
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.907
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.781
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.405
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.934
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.866
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.543
	CNS0095610	Silvery flower (tetraploid) 1	10.489
	CNS0095611	Silvery flower (tetraploid) 2	5.065
	CNS0095612	Silvery flower (tetraploid) 3	4.583
	CNS0095613	Golden flower (tetraploid) 1	6.790
	CNS0095614	Golden flower (tetraploid) 2	9.010
	CNS0095615	Golden flower (tetraploid) 3	3.959
CRA001975	CRR073297	Stem 1	9.894
	CRR073298	Stem 2	9.035
	CRR073299	Stem 3	11.071
	CRR073300	Leaf 1	10.232
	CRR073301	Leaf 2	8.874
	CRR073302	Leaf 3	9.449
	CRR073303	Juvenile bud 1	9.314
	CRR073304	Juvenile bud 2	5.866
	CRR073305	Juvenile bud 3	7.836
	CRR073306	Third green 1	2.476
	CRR073307	Third green 2	2.317
	CRR073308	Third green 3	1.774
	CRR073309	Second white 1	3.119
	CRR073310	Second white 2	1.781
	CRR073311	Second white 3	1.862
	CRR073312	Silver flowering 1	2.322
	CRR073313	Silver flowering 2	2.534
	CRR073314	Silver flowering 3	2.642
	CRR073315	Gold flowering 1	2.288
	CRR073316	Gold flowering 2	2.144
	CRR073317	Gold flowering 3	2.006
	CRR073318	Tawny withering 1	10.514
	CRR073319	Tawny withering 2	7.402
	CRR073320	Tawny withering 3	9.274