Gene detail

Detail information of GWHGAAZE021577

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663715.1	0	PREDICTED: origin recognition complex subunit 5 [Vitis vinifera]
Swissprot	tr\|Q6EWX0\|ORC5_ARATH	0	Origin of replication complex subunit 5 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|F6GSP8\|F6GSP8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43303.1}
TAIR10	AT4G29910.1	1E-174	origin recognition complex protein 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57225334	57229516	+
GWHAAZE00000006	mRNA	57225334	57229516	+
GWHAAZE00000006	exon	57225334	57226166	+
GWHAAZE00000006	exon	57226264	57226686	+
GWHAAZE00000006	exon	57228631	57228964	+
GWHAAZE00000006	exon	57229463	57229516	+
GWHAAZE00000006	CDS	57225334	57226166	+
GWHAAZE00000006	CDS	57226264	57226686	+
GWHAAZE00000006	CDS	57228631	57228964	+
GWHAAZE00000006	CDS	57229463	57229516	+

Transcript Sequence
>GWHTAAZE021601 ATGGGTAAAGAGGAAAGTCCACAAATTAACAGACGAACTACGAGATTATCCTCTTCGAGCCCCAATTTGAACAACGCAGTCGAAATACCGAAAAATAGTAATGCTCAATCTGTCACACTGGCTGATCTCGTGTTTGGTGAGGCACCTTTGAACTTTGACGATTTAGTTTGTAGTTTTCCTGGTAGGTGTACTCAGATTACTCAATTAATACACCTTTTGGGTCCCGTGGATTCTCCGATGATTCCACTCTTTATATACGGAGGTCCATCAACTGGCAAAACGAGCACTGTGCTTCAGATATTCAAACACCTAAACCGCCCGTTTGTTTATTCGAGTTGTCGTACCTGTTACAATCCCAGGATATTGTTTGAATCTATCCTGAACCAACTTTTGCTTCATAGAAAAGGGGAAGATAATGCCTATTCGAGTGCAAAACGCTGTGAAAAGCCATCTGATTTTGTTAACTTTCTACACGAAGCGTTGGCTAGTGTTGTAAATAATCTCAAGCAATATAAGGGGAAATCAAGCTCAAAGAAGTCGTCTAGACGCCCCAAAGGAAGAATGGTTTACTTGATAATTGATAATTTGGAGCTTGTTCAAGAGTGGGATAAGCCTTCGAGCATATTGCCATTTTTGTTTATGCTTTATGATATTTTGAAGATGACTGATATTGGTCTGATATTTATTAGTAGTAGGTCACCTGATGCATATTACTCAGATACAGGTTATGTAGAGCCGGTTCCTATTTATTTTCCTGATTACACAGAAGATGATCTTCGTAAAATCTTCATAAGAAACCAAGAAAACCCAAAACTTTATTCATCTTTTCTTGATGTGGTATTGAAGCCTTTCTGTCGAGTAACAAGACGGGTCGATGAATTATCGACTGCCTTGACACAGTTATTTAAAAAATACTGTGAACCCTTAAGTGACACCGGAGTTGCTCCAAATGAAGAGATGAAGAGAAGGTTATTTAGTCATCTTCAACCACATATTTCACCTTCTCTAAATGAGATATTCAGGGTTCTGTCTCGGCCTTCCCTTGACACCACAGCCAGCAAGGACACAATTAAGCAAAAAGCCAGTTCAAGGAAACTGAGAGTTTCTGAAGCCTTTGATGAGATAGACTTCCATATGTCTATATCTGCAAAGTATCTTCTGATTTCTGCATTCATAGCTTCAAGAAATCCAGCTACTCTTGATGCCTCATTGTTTGATTCAACTGGTGGTTCCAACAGTCGAAAACGGAAGAGGAAGAGCTCCGATAAGTCAATCGAGCAGAAAGAAGCTAAAGAACAAGAGTTACCCATGAAAGGACCTGGAACTTTCCCATTGGAGAGGTTGTTAGCCATATTTCAATGTATAACATCTGTCGCAGAATATTCACTCGATGAAGAACGAGAGGATGATGGGTTTGGAGGTGAAAGTGGGAGTTGTGGACTGATGTCTGATGTTCTTTTACAACTATCAAGTCTTTGCAATGCTAATTTTATCAGCAAAGGAGGAAGCTGCCCATTGGAGGGATCAGCTCGCTACAGATCTACAGTCTCTGAAGATATGGCTTTGCAGGTAATCTTTTCAAGTCCACGTGTTGCAAGGAGCCTGAAGTTTCCTCTGTCAAAGTACTTATTTAGAAGATATTGA

Network for GWHGAAZE021577

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0228

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13191.7	AAA_16	59	205	5.10E-10
PF14630.7	ORC5_C	249	543	9.90E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02607	ORC5	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0000808	cellular_component	origin recognition complex
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.703
	SRR3591706	second leaf	0.702
	SRR3591707	mature leaf	0.899
	SRR3591708	Shoot apex	1.236
	SRR3591709	Stem	0.883
	SRR3591710	White floral bud	1.355
	SRR3591711	White flower	2.037
	SRR3591712	Green floral bud	2.059
	SRR3591713	Yellow flower	0.782
SRP173429	SRR8316895	Juvenile bud stage	5.740
	SRR8316896	Juvenile bud stage	10.518
	SRR8316897	Juvenile bud stage	4.977
	SRR8316894	Third green stage	4.917
	SRR8316900	Third green stage	14.369
	SRR8316901	Third green stage	12.979
	SRR8316898	Complete white stage	3.406
	SRR8316899	Complete white stage	14.692
	SRR8316903	Complete white stage	7.451
	SRR8316902	Silver flowering stage	3.314
	SRR8316904	Silver flowering stage	7.300
	SRR8316905	Silver flowering stage	2.634
	SRR8316906	Gold flowering stage	8.133
	SRR8316907	Gold flowering stage	6.232
	SRR8316908	Gold flowering stage	6.733
SRP132670	SRR6706286	Control	7.772
	SRR6706287	Light intensity 50%	7.782
	SRR6706288	Light intensity 20%	9.260
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.656
	CNS0095593	Slightly white alabastrum(diploid) 2	8.303
	CNS0095594	Slightly white alabastrum(diploid) 3	6.140
	CNS0095595	Whole white alabastrum(diploid) 2	6.497
	CNS0095596	Whole white alabastrum(diploid) 3	5.244
	CNS0095597	Whole white alabastrum(diploid) 4	6.958
	CNS0095598	Silvery flower (diploied) 1	7.132
	CNS0095599	Silvery flower (diploied) 2	6.549
	CNS0095600	Silvery flower (diploied) 3	13.289
	CNS0095601	Golden flower (diploid) 1	5.097
	CNS0095602	Golden flower (diploid) 2	10.604
	CNS0095603	Golden flower (diploid) 3	9.899
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.500
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.961
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.896
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.697
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.665
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.577
	CNS0095610	Silvery flower (tetraploid) 1	19.093
	CNS0095611	Silvery flower (tetraploid) 2	19.496
	CNS0095612	Silvery flower (tetraploid) 3	16.769
	CNS0095613	Golden flower (tetraploid) 1	10.004
	CNS0095614	Golden flower (tetraploid) 2	14.653
	CNS0095615	Golden flower (tetraploid) 3	13.100
CRA001975	CRR073297	Stem 1	6.971
	CRR073298	Stem 2	6.645
	CRR073299	Stem 3	4.363
	CRR073300	Leaf 1	7.148
	CRR073301	Leaf 2	5.863
	CRR073302	Leaf 3	6.229
	CRR073303	Juvenile bud 1	5.092
	CRR073304	Juvenile bud 2	5.171
	CRR073305	Juvenile bud 3	6.842
	CRR073306	Third green 1	2.238
	CRR073307	Third green 2	1.522
	CRR073308	Third green 3	1.648
	CRR073309	Second white 1	2.726
	CRR073310	Second white 2	2.422
	CRR073311	Second white 3	3.744
	CRR073312	Silver flowering 1	3.080
	CRR073313	Silver flowering 2	3.197
	CRR073314	Silver flowering 3	2.586
	CRR073315	Gold flowering 1	5.031
	CRR073316	Gold flowering 2	4.552
	CRR073317	Gold flowering 3	4.700
	CRR073318	Tawny withering 1	5.636
	CRR073319	Tawny withering 2	4.877
	CRR073320	Tawny withering 3	5.288