Gene detail

Detail information of GWHGAAZE021578

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009765257.1	4.9124E-139	PREDICTED: probable serine/threonine-protein kinase NAK isoform X2 [Nicotiana sylvestris]
COG	YP_007207208.1	9E-20	WD40 repeat-containing protein
Swissprot	tr\|P46573\|APK1B_ARATH	4E-109	Protein kinase APK1B, chloroplastic (Precursor)
trEMBL	tr\|M1AM81\|M1AM81_SOLTU	2E-133	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400025863}
TAIR10	AT1G76360.1	5E-101	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57235745	57250965	-
GWHAAZE00000006	mRNA	57235745	57250965	-
GWHAAZE00000006	exon	57250625	57250965	-
GWHAAZE00000006	exon	57249831	57250300	-
GWHAAZE00000006	exon	57248604	57248935	-
GWHAAZE00000006	exon	57248070	57248099	-
GWHAAZE00000006	exon	57241661	57241799	-
GWHAAZE00000006	exon	57241414	57241550	-
GWHAAZE00000006	exon	57241215	57241338	-
GWHAAZE00000006	exon	57235745	57236166	-
GWHAAZE00000006	CDS	57250625	57250965	-
GWHAAZE00000006	CDS	57249831	57250300	-
GWHAAZE00000006	CDS	57248604	57248935	-
GWHAAZE00000006	CDS	57248070	57248099	-
GWHAAZE00000006	CDS	57241661	57241799	-
GWHAAZE00000006	CDS	57241414	57241550	-
GWHAAZE00000006	CDS	57241215	57241338	-
GWHAAZE00000006	CDS	57235745	57236166	-

Transcript Sequence
>GWHTAAZE021602 ATGTTCAGTCCCCCGTCGGAGCAGTTATGCCGTCGCTTTTTGCTTCATGAGGTTATATCGGCGACCAACAATTTCGACGATTCCATGGTTATAGGTAAGGGAGGATTCGGTAGGGTTTACAAAGGGGATATCATTGACAATAATGGCGCATATACTACTGTTGCTTTCAAGCGTTTGAATCCCTTGTCCAAGCAAGGTGCTCCTGAGTTTTGGACCGAGATTAATATGCTATCAAATTTTCGACATAGCCACCTCGTTTCTTTGATCGGCTATTGCGATCATGATAACGAGATGATTCTTGTTTATGAGTATATGGTCCGTGGAACTCTAGCTGATCATTTATTCACGAGGAAATCAGATGTGTACGCATTTGGGGTGGTATTGTTGGAAGTACTCTGTGAGAGGCCGGCTCTGGATCGAAGCCTTGATGAGGACCAATGGGGTCTTGCTGGATGGGGCCAGCAGTGCATCAAAGAAGGAGCATCACATCAGATTATTGGGCCGAATTTGAAGTGGGAAATCTTGCCAAATTCTCTCACGGAATTTGTGCAAATTGCAGATCAGTGCTTGCATAGTCGTCCAAAGCAACGTCCTACAATGTCTGAGGTGGTGGCCAGACTTGAGCTTGCATTGGCATTGCAACTACGCACCAATCTTGTGATTGAGGAGTATTTGTTTGATACTTGCTTGCCTATTAACGACCAAGAAAATGTGGATTCTTATCCGAAGGACGACCATATTGATAAAGTTGTGCAGCTAGGGGATTCAAGCATCGGACAGTTTTTCCAACTTGGAGCTCCGGTGGTCTCGGTACATGGTGATGCAAAACCATCAAGTAATGCTAAAAGCAACAACAACAGTGGCCATAATAGCACATTGTCGAACAAAGATGAAGGAAATGTCCAGGTTATGCCTACAAGTGGGCAAATTGTCACTCCAAATTTGAAAATATTCACATTTGCTGAATTGAAAAGTGCAACTAAGAACTTCAGTGTGGATGTGTTGGGTGAGGGAGGTTTTGGAATTGTTTTCAAAGGTTGGGTCAATCAGAAGACATATTCCCCGTCAAAGGTTGGAGTTGGGAAAGCCGTCGCCATTAAGAGGTTAGGGCAAGAGAGCATGCAAGGACCTGCTGAAGGGCTGGGTATTGATGATAGAGGTTTAACCCGCTTGATGGAAGTTGAAATTTTGGGAAAATTTAGTCATCCTAATATTGTGAAGCTCTTGGGGTACTGCTTTGAGAAAGACAGGGAATTCCTCCTTGTTTATGAATACATGCTGAATGGAAGTTTAGATTGCCACCTTTTCAGAAAAAGTGCAAAATCACTTCTGTGGGACACACGGCTTAAAATAGCAGTAGGAGCAGCTCGAGGCCTTTCTTTCTTGCATGCAACAGAGAATCAAGTCATAGTCCGTGACATCAAGAGCAAAAATATATTGCTGGATGGGGATTTTAATGTAAAGCTTTCGGGTTTTGGATCGACAAAGAGATATCCTGAAAATGGGGAGTCCCACGTTTCAACAAGAGTTATCGGTACCTATGGTTATGCAGCTCCAGAGTACATGACTACTGGATATTTGTATCCGAAAAGCGATGTCTACGGTTTTGGAGTGGTGTTGCTCGAATTACTAACGGGTTTGAGGGTGATTGATGGGAGTAGGACCGAAAAAAATAATTTGGTGAAATGGGCCATGCCTTTGCTGCCTCACAAAAAAATGCTAACGAGAGTAGTGGATCCAAGGCTGGAAAATGATTACCCTCCACAAGAAGCCTTCGAATTGGCTTCACTTATACTACAATGTCTTCAAACTTACCCCAAAGTCCGGCCTTCAATGAACGAAGTATTGCAGAGTTTAGAACAAATTAACTCCATCAAGAAGGGTAACTCCAAAGTGGAGGTGGCTCAGGCTAGGCATCCTACGGTTCAAAGAGAGGCGACACCCTACAAATTCTTGTGGTCATGGATTCGTGGTTTGGGAGGAAGCAACTCATAG

Network for GWHGAAZE021578

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	30	114	1.20E-14
PF07714.18	PK_Tyr_Ser-Thr	334	619	2.70E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.095
	SRR3591706	second leaf	1.689
	SRR3591707	mature leaf	1.327
	SRR3591708	Shoot apex	2.825
	SRR3591709	Stem	2.179
	SRR3591710	White floral bud	1.983
	SRR3591711	White flower	1.194
	SRR3591712	Green floral bud	1.546
	SRR3591713	Yellow flower	2.016
SRP173429	SRR8316895	Juvenile bud stage	0.762
	SRR8316896	Juvenile bud stage	1.598
	SRR8316897	Juvenile bud stage	1.337
	SRR8316894	Third green stage	0.649
	SRR8316900	Third green stage	1.851
	SRR8316901	Third green stage	1.735
	SRR8316898	Complete white stage	0.899
	SRR8316899	Complete white stage	1.646
	SRR8316903	Complete white stage	1.097
	SRR8316902	Silver flowering stage	0.536
	SRR8316904	Silver flowering stage	1.321
	SRR8316905	Silver flowering stage	0.671
	SRR8316906	Gold flowering stage	1.049
	SRR8316907	Gold flowering stage	1.118
	SRR8316908	Gold flowering stage	2.901
SRP132670	SRR6706286	Control	1.599
	SRR6706287	Light intensity 50%	1.760
	SRR6706288	Light intensity 20%	1.787
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.242
	CNS0095593	Slightly white alabastrum(diploid) 2	1.036
	CNS0095594	Slightly white alabastrum(diploid) 3	0.952
	CNS0095595	Whole white alabastrum(diploid) 2	0.566
	CNS0095596	Whole white alabastrum(diploid) 3	0.716
	CNS0095597	Whole white alabastrum(diploid) 4	0.558
	CNS0095598	Silvery flower (diploied) 1	0.518
	CNS0095599	Silvery flower (diploied) 2	0.914
	CNS0095600	Silvery flower (diploied) 3	1.016
	CNS0095601	Golden flower (diploid) 1	0.290
	CNS0095602	Golden flower (diploid) 2	0.674
	CNS0095603	Golden flower (diploid) 3	0.964
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.324
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.548
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.386
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.968
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.069
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.170
	CNS0095610	Silvery flower (tetraploid) 1	1.536
	CNS0095611	Silvery flower (tetraploid) 2	1.313
	CNS0095612	Silvery flower (tetraploid) 3	1.262
	CNS0095613	Golden flower (tetraploid) 1	0.702
	CNS0095614	Golden flower (tetraploid) 2	0.629
	CNS0095615	Golden flower (tetraploid) 3	0.536
CRA001975	CRR073297	Stem 1	1.685
	CRR073298	Stem 2	1.367
	CRR073299	Stem 3	0.641
	CRR073300	Leaf 1	2.118
	CRR073301	Leaf 2	2.050
	CRR073302	Leaf 3	1.079
	CRR073303	Juvenile bud 1	1.312
	CRR073304	Juvenile bud 2	0.860
	CRR073305	Juvenile bud 3	1.270
	CRR073306	Third green 1	0.215
	CRR073307	Third green 2	0.480
	CRR073308	Third green 3	0.464
	CRR073309	Second white 1	0.259
	CRR073310	Second white 2	0.371
	CRR073311	Second white 3	0.451
	CRR073312	Silver flowering 1	0.297
	CRR073313	Silver flowering 2	0.153
	CRR073314	Silver flowering 3	0.126
	CRR073315	Gold flowering 1	0.210
	CRR073316	Gold flowering 2	0.704
	CRR073317	Gold flowering 3	0.220
	CRR073318	Tawny withering 1	0.238
	CRR073319	Tawny withering 2	0.248
	CRR073320	Tawny withering 3	0.141