Gene detail

Detail information of GWHGAAZE021581

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011088709.1	4.1935E-155	PREDICTED: putative receptor-like protein kinase At5g39000 isoform X2 [Sesamum indicum]
COG	YP_001958461.1	2E-21	hypothetical protein Aasi_1443
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	7E-103	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A022RZ14\|A0A022RZ14_ERYGU	4E-133	Uncharacterized protein {ECO:0000313\|EMBL:EYU44215.1}
TAIR10	AT3G51550.1	2E-92	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57299385	57304180	-
GWHAAZE00000006	mRNA	57299385	57304180	-
GWHAAZE00000006	exon	57299385	57299558	-
GWHAAZE00000006	exon	57299637	57299773	-
GWHAAZE00000006	exon	57299870	57300008	-
GWHAAZE00000006	exon	57301537	57301877	-
GWHAAZE00000006	exon	57302066	57302173	-
GWHAAZE00000006	exon	57302263	57302307	-
GWHAAZE00000006	exon	57303061	57304180	-
GWHAAZE00000006	CDS	57303061	57304180	-
GWHAAZE00000006	CDS	57302263	57302307	-
GWHAAZE00000006	CDS	57302066	57302173	-
GWHAAZE00000006	CDS	57301537	57301877	-
GWHAAZE00000006	CDS	57299870	57300008	-
GWHAAZE00000006	CDS	57299637	57299773	-
GWHAAZE00000006	CDS	57299385	57299558	-

Transcript Sequence
>GWHTAAZE021605 ATGTTCAGTTCCCCGTCGGAGCACTTATGCCGTCGATTTTCACTCGATGAGATTCTATTGGCAACCAACAATTTTGACGATTCCACGGTTATAGGTAAGGGTGGATTCGGTACGGTTTACAAAGGGGATATCATTGATAATGATGGCGCATATACTACTGTTGCTTTCAAGCGTTTGAATCCCTTGTCCAAGCAAGGTGCTCCTGAGTTTTGGACCGAGATTAATATGCTATCAAATTTTCGACATAGCCACCTCGTTTCTTTGATTGGCTATTGCGATCATCATAACGAGATGATTCTTGTTTACGAGTATATGGTCCGTGGAACCCTAGCTGATCATTTGTACAAAATTAGTAAAAACAACAATAGTGGTAATAGTTTACCTTTATCCTGGGTGCAAAGACTCAAAATATGTATAGGGGCTGCTCGAGGATTGGACTACCTCCATACCGGTACTGCCATCTTGGAGAGAGTCATACATCGAGATGTGAAAAGCTCAAACATTTTGTTGGATGAGAATTGGGCAGCTAAGATTTCGGATTTTGGATTGTCCAGAATTGGCCCTGCGGAACAGGAGGTCACCCATGTTAGTACTGTGCACATCAAAGGCACATTCGGTTATATGGATCCAGATTATTTCGTGACTCACAAATTCACGAGGAAATCGGATGTGTACGCATTTGGGGTGGTATTGTTGGAAGTACTCTGCGAGAGGCCGGCTTTGGATCGAAGCCTTGATGAGGACCAATGGGGTCTTGCTAGATGGGGCCAGCAGTGCATCAAAGAAGGAGCATCACATCAGATTATTGGGCCGAATTTGAAGTGGGAAATCTTGCCAAATTCTCTCACAGCATTTGTGCAAATTGCGGATCAATGCTTGCATAGTTGTCCAAAGAAACGTCCTACAATGTCTGAGGTGGTGACCAGACTTGAGTTTGCATTGGCATCGCAACTACGCACTGATCTTGTGATCGAGGAGTATTTCTTTGATACTTGCTTGCCTGTTAGCGACCAAGAAAATGCGGATTCTTATCCGGAGGGCGACCATTTTGATAAAGTTGTACAGCTAGGGAATTCAAGCAGCGGACAGTTTTTCCAACTCGGAGCTCCGGTGGTCTCAGTTCCTGCGTTGATTCCTTCAGCTTTGCTTCTCCCTGTTATTATCTTACATAATGATGCAAAACCATCAAGTACTCCTAAAAGCAACAACAACAGTGGCCATAATAGCACATTGTTGAACAAAGATGGAGGCAGCGCCCAGGATGTGCCTACAGTACATAGTGATGCAAAGCCATCAAGTAACGCTAAAAGCAACAACAACAGCGGCCATAATAGCACATTGCTGAACAAAGACGGAGGCGTTGTCCAGGATGTGCCTACAAGTGGGCAAATTTTGAATCCAAATATGAAAATTTTCACATTCAATGAATTCTTTGAATTCAGAAGAGCAACTAGGAACTTCGTACTGGATGTGTTGGGCGAGGGAGGTTTTGGAATTGTTTCCAAAGGTTGGGTTGATGAGAAGACATATTCCCCATCACGGGTTGGAGTTGGGAAGGCCGTTGCCATTAAGAGGTTAAGGCGAGAGAGCATGCAAGGACTTGCTGAAGGGCTGATGGAAGTCGAAATTTTGGAAAAATTTAGTCATCCTAATATTGTGAAGCTCTTGGGGTACTACCGTGGGGAAGATGGGGAATTCCTCCTTGTTTATGAATACATGCTGAATCGAAGTTTAGATTGCCACCTTTTCAGAAGAGGTGCAGAATCACTTCCATGGGGCACACGGCTTAATATAGCAGTTGGAGCAGCTCGAGGCCTTTCTTTCTTGCATGCAACAGAGAATCAAGTCATAGTCCGTGACGTTCAGACGAAAAATATATTGCTGGATGGGGATTTTAATGCAAAAGTTTCTGGTTTTGGATGTGCAAAGGGATTTCCTGAAAATGAGGAGTCCCACGTTTCAACAAGAGTTATCGGTACCTTTGGTTATGCAGCTCCGGAGTACATAGCCACTGGTAAGTCATTATCTAAGTCTGTAAGTAGGGAGCATCATTGTTTAATTTGA

Network for GWHGAAZE021581

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0003

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	29	310	9.80E-46
PF07714.18	PK_Tyr_Ser-Thr	490	678	3.60E-27

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.440
	SRR3591706	second leaf	3.260
	SRR3591707	mature leaf	4.979
	SRR3591708	Shoot apex	5.888
	SRR3591709	Stem	9.016
	SRR3591710	White floral bud	5.844
	SRR3591711	White flower	7.625
	SRR3591712	Green floral bud	3.565
	SRR3591713	Yellow flower	6.005
SRP173429	SRR8316895	Juvenile bud stage	0.955
	SRR8316896	Juvenile bud stage	1.786
	SRR8316897	Juvenile bud stage	1.000
	SRR8316894	Third green stage	0.832
	SRR8316900	Third green stage	2.128
	SRR8316901	Third green stage	2.535
	SRR8316898	Complete white stage	1.857
	SRR8316899	Complete white stage	3.637
	SRR8316903	Complete white stage	2.617
	SRR8316902	Silver flowering stage	2.079
	SRR8316904	Silver flowering stage	3.292
	SRR8316905	Silver flowering stage	1.249
	SRR8316906	Gold flowering stage	5.293
	SRR8316907	Gold flowering stage	5.532
	SRR8316908	Gold flowering stage	7.730
SRP132670	SRR6706286	Control	3.508
	SRR6706287	Light intensity 50%	3.490
	SRR6706288	Light intensity 20%	3.709
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.802
	CNS0095593	Slightly white alabastrum(diploid) 2	0.903
	CNS0095594	Slightly white alabastrum(diploid) 3	1.009
	CNS0095595	Whole white alabastrum(diploid) 2	0.775
	CNS0095596	Whole white alabastrum(diploid) 3	0.786
	CNS0095597	Whole white alabastrum(diploid) 4	1.317
	CNS0095598	Silvery flower (diploied) 1	1.759
	CNS0095599	Silvery flower (diploied) 2	1.279
	CNS0095600	Silvery flower (diploied) 3	3.882
	CNS0095601	Golden flower (diploid) 1	1.170
	CNS0095602	Golden flower (diploid) 2	4.115
	CNS0095603	Golden flower (diploid) 3	3.600
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.508
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.012
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.918
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.096
	CNS0095610	Silvery flower (tetraploid) 1	10.966
	CNS0095611	Silvery flower (tetraploid) 2	11.417
	CNS0095612	Silvery flower (tetraploid) 3	14.192
	CNS0095613	Golden flower (tetraploid) 1	6.910
	CNS0095614	Golden flower (tetraploid) 2	12.207
	CNS0095615	Golden flower (tetraploid) 3	16.643
CRA001975	CRR073297	Stem 1	3.326
	CRR073298	Stem 2	2.333
	CRR073299	Stem 3	1.796
	CRR073300	Leaf 1	3.014
	CRR073301	Leaf 2	2.476
	CRR073302	Leaf 3	3.114
	CRR073303	Juvenile bud 1	2.176
	CRR073304	Juvenile bud 2	1.849
	CRR073305	Juvenile bud 3	3.063
	CRR073306	Third green 1	1.786
	CRR073307	Third green 2	1.620
	CRR073308	Third green 3	1.901
	CRR073309	Second white 1	1.999
	CRR073310	Second white 2	3.405
	CRR073311	Second white 3	2.171
	CRR073312	Silver flowering 1	1.596
	CRR073313	Silver flowering 2	1.693
	CRR073314	Silver flowering 3	1.060
	CRR073315	Gold flowering 1	1.369
	CRR073316	Gold flowering 2	2.470
	CRR073317	Gold flowering 3	0.225
	CRR073318	Tawny withering 1	1.684
	CRR073319	Tawny withering 2	2.393
	CRR073320	Tawny withering 3	2.513