Gene detail

Detail information of GWHGAAZE021587

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006489320.1	0	PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Citrus sinensis]
COG	YP_008797957.1	1E-22	ubiquitin-activating enzyme E1-like protein
Swissprot	tr\|O65041\|UBA3_ARATH	0	NEDD8-activating enzyme E1 catalytic subunit
trEMBL	tr\|V4RYX8\|V4RYX8_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR33087.1}
TAIR10	AT5G19180.1	3E-176	E1 C-terminal related 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57414041	57421860	-
GWHAAZE00000006	mRNA	57414041	57421860	-
GWHAAZE00000006	exon	57414041	57414328	-
GWHAAZE00000006	exon	57415791	57415908	-
GWHAAZE00000006	exon	57416290	57416411	-
GWHAAZE00000006	exon	57417443	57417499	-
GWHAAZE00000006	exon	57417590	57417652	-
GWHAAZE00000006	exon	57417772	57418004	-
GWHAAZE00000006	exon	57419315	57419517	-
GWHAAZE00000006	exon	57421488	57421651	-
GWHAAZE00000006	exon	57421759	57421860	-
GWHAAZE00000006	CDS	57421759	57421860	-
GWHAAZE00000006	CDS	57421488	57421651	-
GWHAAZE00000006	CDS	57419315	57419517	-
GWHAAZE00000006	CDS	57417772	57418004	-
GWHAAZE00000006	CDS	57417590	57417652	-
GWHAAZE00000006	CDS	57417443	57417499	-
GWHAAZE00000006	CDS	57416290	57416411	-
GWHAAZE00000006	CDS	57415791	57415908	-
GWHAAZE00000006	CDS	57414041	57414328	-

Transcript Sequence
>GWHTAAZE021611 ATGGCGGACTCCACCCCGCAAGTTAGCAGATCGAGAGACCTGGACAAGCTCCTCCTCCGTCCAGGCCATCTCGTCAGCCCTAACTTCGTACCAGGCACCGAATTGAGAGATGATATTGAGACTTTGGCGAAAGTTTTGGTGGTTGGTGCTGGTGGATTGGGGTGTGAACTGTTGAAGGATTTGGCATTATCGGGGTTCAAAAACCTCGAAGTCATTGATATGGATCGAATCGAGGTTTCTAATCTCAATCGTCAATTCCTGTTCAGGCTAGAGGATGTTGGTAAGCCGAAGGCGGAGGTGGCTGCAAAAAGAGTGATGGAAAGAATTAGCGGTGTGAATATTGTACCACACTTTTGTCGCATCGAGGACAAAGAGCTAGACTTTTACAATGATTTCCTTATTATTGTCCTTGGTCTCGATTCTATTGAGGCTCGGAGCTACATAAATGCCGTGGCTTGTAGTTTTCTAGAGTATGAATCTGATGACAAACCTCGAGAAGAGACAATCAAACCTATGGTAGATGGTGGGACCGAAGGTTTCAAGGGCCATGCGAGGGTTATTTTGCCAGGAAAAACACCGTGCTTTGAGTGTACCATTTGGCTTTTCCCTCCGCAAGTAAAGTTTCCTTTATGTACTCTTGCGGAAACACCTAGAAATGCTGCTCATTGCATTGAATATGCCCATTTGATCAAATGGGATGAGGTTCACAGTGGAAAGACTTTTGATCCAGATAACCCGGAACATATGCAGTGGGTTTACTCAGAGGCTGTGAAGAGAGCAGAGCTTTTTGGAATTCCTGGAGTTACTTATTCCTTTACTCAGGGCGTGGTGAAAAATATTATACCTGCTATAGCTTCCACCAATGCAATTATATCAGCTGCATGTGCTTTGGAAACATTGAAGATTGCGTCTGGGTGCAGTAAACCATTAGAAAATTATTTGACGTATAATGGCGTTGAAGGTCTCCACACAAAAGTGACAGAGTTTGTGAGGGACAAGGACTGTCTTGTATGTGGTCCTGGCATTCGTATTGAGCTGGATACTTCGGTTACTTTAAAGAAGTTCATCGATCAACTTGAGGATCACCCGACGCTTCTCCTATCAAAAGCAAGTGTAACACACCGAGGGAAGAATCTCTACATGCAGGCCCCACCAATACTAGAAGAGATGACCCGATCAAACCTCGATAAACCACTTTTTGACCTAATGGACCGTACTCCCAAGGACATTGTTCATGTGACCGGCTCAGCGGGCAAGAGCGACTCTAAGCAATCGTGTTTGAGGAAATTACGCGTTGTTTTTAAGGCCGCAGGTGGGGTTGCTGACATGGATGTTGCTGGTGGCGCATAG

Network for GWHGAAZE021587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	34	335	1.80E-71
PF08825.11	E2_bind	345	433	8.70E-23

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
K10686	UBE1C, UBA3	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0045116	biological_process	protein neddylation
GO:0019781	molecular_function	NEDD8 activating enzyme activity
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.892
	SRR3591706	second leaf	10.948
	SRR3591707	mature leaf	16.626
	SRR3591708	Shoot apex	21.992
	SRR3591709	Stem	17.940
	SRR3591710	White floral bud	18.431
	SRR3591711	White flower	19.473
	SRR3591712	Green floral bud	26.168
	SRR3591713	Yellow flower	15.512
SRP173429	SRR8316895	Juvenile bud stage	20.813
	SRR8316896	Juvenile bud stage	34.331
	SRR8316897	Juvenile bud stage	17.499
	SRR8316894	Third green stage	11.346
	SRR8316900	Third green stage	34.971
	SRR8316901	Third green stage	29.515
	SRR8316898	Complete white stage	9.574
	SRR8316899	Complete white stage	36.822
	SRR8316903	Complete white stage	11.450
	SRR8316902	Silver flowering stage	12.130
	SRR8316904	Silver flowering stage	10.575
	SRR8316905	Silver flowering stage	6.691
	SRR8316906	Gold flowering stage	21.693
	SRR8316907	Gold flowering stage	20.388
	SRR8316908	Gold flowering stage	23.000
SRP132670	SRR6706286	Control	27.372
	SRR6706287	Light intensity 50%	30.096
	SRR6706288	Light intensity 20%	33.159
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.378
	CNS0095593	Slightly white alabastrum(diploid) 2	29.461
	CNS0095594	Slightly white alabastrum(diploid) 3	33.392
	CNS0095595	Whole white alabastrum(diploid) 2	30.803
	CNS0095596	Whole white alabastrum(diploid) 3	32.481
	CNS0095597	Whole white alabastrum(diploid) 4	23.926
	CNS0095598	Silvery flower (diploied) 1	24.750
	CNS0095599	Silvery flower (diploied) 2	23.075
	CNS0095600	Silvery flower (diploied) 3	30.628
	CNS0095601	Golden flower (diploid) 1	28.925
	CNS0095602	Golden flower (diploid) 2	32.170
	CNS0095603	Golden flower (diploid) 3	31.766
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.839
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.209
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.354
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.561
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.474
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.773
	CNS0095610	Silvery flower (tetraploid) 1	28.600
	CNS0095611	Silvery flower (tetraploid) 2	40.283
	CNS0095612	Silvery flower (tetraploid) 3	26.225
	CNS0095613	Golden flower (tetraploid) 1	18.409
	CNS0095614	Golden flower (tetraploid) 2	30.278
	CNS0095615	Golden flower (tetraploid) 3	20.526
CRA001975	CRR073297	Stem 1	31.318
	CRR073298	Stem 2	26.915
	CRR073299	Stem 3	31.288
	CRR073300	Leaf 1	31.730
	CRR073301	Leaf 2	27.699
	CRR073302	Leaf 3	29.250
	CRR073303	Juvenile bud 1	32.460
	CRR073304	Juvenile bud 2	19.646
	CRR073305	Juvenile bud 3	28.045
	CRR073306	Third green 1	7.176
	CRR073307	Third green 2	6.911
	CRR073308	Third green 3	6.957
	CRR073309	Second white 1	12.201
	CRR073310	Second white 2	9.844
	CRR073311	Second white 3	9.703
	CRR073312	Silver flowering 1	9.118
	CRR073313	Silver flowering 2	9.522
	CRR073314	Silver flowering 3	9.511
	CRR073315	Gold flowering 1	13.972
	CRR073316	Gold flowering 2	18.352
	CRR073317	Gold flowering 3	9.316
	CRR073318	Tawny withering 1	23.945
	CRR073319	Tawny withering 2	27.619
	CRR073320	Tawny withering 3	25.160