Detail information of GWHGAAZE021590


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO99003.11.12441E-76unnamed protein product [Coffea canephora]
Swissprottr|Q8L4B2|NFYC9_ARATH3E-69Nuclear transcription factor Y subunit C-9
trEMBLtr|A0A068TUH8|A0A068TUH8_COFCA4E-77Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313|EMBL:CDO99003.1}
TAIR10AT1G08970.48E-56nuclear factor Y, subunit C9

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5748571457486157-
GWHAAZE00000006mRNA5748571457486157-
GWHAAZE00000006exon5748571457486157-
GWHAAZE00000006CDS5748571457486157-
Transcript Sequence

Network for GWHGAAZE021590

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00808.24CBFD_NFYB_HMF26893.20E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC

KEGG pathway

KO Enzyme pathway mapID
K08066NFYC, HAP5 Antigen processing and presentation map04612

Gene Ontology

GO term OntologyName
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE021590.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.729
SRR3591706second leaf6.592
SRR3591707mature leaf15.515
SRR3591708Shoot apex16.352
SRR3591709Stem28.358
SRR3591710White floral bud21.966
SRR3591711White flower21.607
SRR3591712Green floral bud14.109
SRR3591713Yellow flower18.615
SRP173429 SRR8316895Juvenile bud stage 13.362
SRR8316896Juvenile bud stage 18.897
SRR8316897Juvenile bud stage 9.006
SRR8316894Third green stage 7.491
SRR8316900Third green stage 21.805
SRR8316901Third green stage 16.751
SRR8316898Complete white stage 8.718
SRR8316899Complete white stage 20.734
SRR8316903Complete white stage 13.864
SRR8316902Silver flowering stage8.699
SRR8316904Silver flowering stage8.455
SRR8316905Silver flowering stage5.321
SRR8316906Gold flowering stage 14.446
SRR8316907Gold flowering stage 16.937
SRR8316908Gold flowering stage 16.953
SRP132670SRR6706286Control15.842
SRR6706287Light intensity 50%17.881
SRR6706288Light intensity 20%20.012
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.432
CNS0095593Slightly white alabastrum(diploid) 219.338
CNS0095594Slightly white alabastrum(diploid) 317.036
CNS0095595Whole white alabastrum(diploid) 215.026
CNS0095596Whole white alabastrum(diploid) 314.023
CNS0095597Whole white alabastrum(diploid) 414.142
CNS0095598Silvery flower (diploied) 138.872
CNS0095599Silvery flower (diploied) 225.677
CNS0095600Silvery flower (diploied) 323.829
CNS0095601Golden flower (diploid) 138.997
CNS0095602Golden flower (diploid) 221.154
CNS0095603Golden flower (diploid) 326.411
CNS0095604Slightly white alabastrum(tetraploid) 126.879
CNS0095605Slightly white alabastrum(tetraploid) 229.279
CNS0095606Slightly white alabastrum(tetraploid) 340.956
CNS0095607Whole white alabastrum(tetraploid) 118.392
CNS0095608Whole white alabastrum(tetraploid) 213.969
CNS0095609Whole white alabastrum(tetraploid) 323.601
CNS0095610Silvery flower (tetraploid) 137.434
CNS0095611Silvery flower (tetraploid) 228.248
CNS0095612Silvery flower (tetraploid) 333.816
CNS0095613Golden flower (tetraploid) 126.510
CNS0095614Golden flower (tetraploid) 233.302
CNS0095615Golden flower (tetraploid) 319.658
CRA001975CRR073297Stem 123.852
CRR073298Stem 221.126
CRR073299Stem 310.389
CRR073300Leaf 120.457
CRR073301Leaf 224.534
CRR073302Leaf 39.696
CRR073303Juvenile bud 17.268
CRR073304Juvenile bud 24.094
CRR073305Juvenile bud 311.296
CRR073306Third green 12.563
CRR073307Third green 22.321
CRR073308Third green 33.417
CRR073309Second white 12.513
CRR073310Second white 23.621
CRR073311Second white 34.980
CRR073312Silver flowering 13.186
CRR073313Silver flowering 25.084
CRR073314Silver flowering 35.306
CRR073315Gold flowering 13.976
CRR073316Gold flowering 25.308
CRR073317Gold flowering 31.144
CRR073318Tawny withering 118.886
CRR073319Tawny withering 217.614
CRR073320Tawny withering 324.427