Gene detail

Detail information of GWHGAAZE021595

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006349226.1	1.3488E-173	PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|O65041\|UBA3_ARATH	2E-148	NEDD8-activating enzyme E1 catalytic subunit
trEMBL	tr\|M1AHZ4\|M1AHZ4_SOLTU	5E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400023216}
TAIR10	AT5G19180.1	3E-104	E1 C-terminal related 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57589813	57597525	+
GWHAAZE00000006	mRNA	57589813	57597525	+
GWHAAZE00000006	exon	57589813	57589828	+
GWHAAZE00000006	exon	57589926	57590089	+
GWHAAZE00000006	exon	57592055	57592255	+
GWHAAZE00000006	exon	57593564	57593796	+
GWHAAZE00000006	exon	57593916	57593978	+
GWHAAZE00000006	exon	57594069	57594125	+
GWHAAZE00000006	exon	57595157	57595278	+
GWHAAZE00000006	exon	57595659	57595741	+
GWHAAZE00000006	exon	57595918	57595967	+
GWHAAZE00000006	exon	57597238	57597525	+
GWHAAZE00000006	five_prime_UTR	57589813	57589828	+
GWHAAZE00000006	five_prime_UTR	57589926	57590089	+
GWHAAZE00000006	five_prime_UTR	57592055	57592255	+
GWHAAZE00000006	five_prime_UTR	57593564	57593607	+
GWHAAZE00000006	CDS	57593608	57593796	+
GWHAAZE00000006	CDS	57593916	57593978	+
GWHAAZE00000006	CDS	57594069	57594125	+
GWHAAZE00000006	CDS	57595157	57595278	+
GWHAAZE00000006	CDS	57595659	57595741	+
GWHAAZE00000006	CDS	57595918	57595967	+
GWHAAZE00000006	CDS	57597238	57597525	+

Transcript Sequence
>GWHTAAZE021619 CGTACCAGGCACCGAATTGAGAGATGATATTGAGACTTTGGCGAAAGTTTTGGTGGTTGGTGCTGGTGGATTGGGGTGTGAACTGTTGAAGGATTTGGCATTATCGGGGTTCAAAAACCTCGAAGTCATTGATATGGATCGAATCGAGGTTTCTAATCTCAATCGTCAATTCCTGTTCAGGCTAGAGGATGTTGGTAAGCCGAAGGCGGAGGTGGCTGCAAAAAGAGTGATGGAAAGAATTAGCGGTGTGAATATTGTACCACACTTTTGTCGATCGAGGACAAAGAGCTAGACTTTACAATGATTTCCTTATTATTGTCCTTGGTCTCGATTCTATTGAGGCTCGGAGCTACATAAATGCCGTGGCTTGTAGTTTTCTAGAGTATGAATCTGATGACAAACCTCGAGAAGAGACAATCAAACCTATGGTAGATGGTGGGACCGAAGGTTTCAAGGGCCATGCGAGGGTTATTTTGCCAGGAAAAACACCGTGCTTTGAGTGTACCATTTGGCTTTTCCCTCCGCAAGTAAAGTTTCCTTTATGTACTCTTGCGGAAACACCTAGAAATGCTGCTCATTGCATTGAATATGCCCATTTGATCAAATGGGATGAGGTTCACAGTGGAAAGACTTTTGATCCAGATAACCCGGAACATATGCAGTGGGTTTACTCAGAGGCTGTGAAGAGAGCAGAGCTTTTTGGAATTCCTGGAGTTACTTATTCCCTTACTCAGGGCGTGGTGAAAAATATTATACCTGCTATAGCTTCCACCAATGCAATTATATCAGCTGCATGTGCTTTGGAAACATTGAAGATTGCGTCTGGGTGCAGTAAACCATTAGAAAATTATTTGACGTATAATGGCGTTGAAGGTCTCCACACAAAAGTGACAGAGTTTGTGAGGGACAAGGACTGTCTTGTATGTGGTCCTGGCATTCTTAGATTCTTTTGGTATGAGAGTTCAAAAACTAACCCATCCGAGAAATGGTTCATCGATCAACTTGAGGATCACCCGACGCTTCTCCTATCAAAAGCAAGTGTAACACACCGAGGGAAGAATCTCTACATGCAGGCCCCACCAATACTAGAAGAGATGACCCGATCAAACCTCGATAAACCACTTTTTGACCTAATGGACCGTACTCCCAAGGACATTGTTCATGTGACCGGCTCAGCGGGCAAGAGCGACTCTAAGCAATCGTGTTTGAGGAAATTACGCGTTGTTTTTAAGGCCGCAGGTGGGGTTGCTGACATGGATGTTGCTGGTGGCGCATAG

Network for GWHGAAZE021595

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0289

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	1	164	1.70E-19
PF08825.11	E2_bind	189	267	4.30E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10686	UBE1C, UBA3	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0045116	biological_process	protein neddylation
GO:0019781	molecular_function	NEDD8 activating enzyme activity
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.060
	SRR3591706	second leaf	9.928
	SRR3591707	mature leaf	10.417
	SRR3591708	Shoot apex	20.833
	SRR3591709	Stem	15.339
	SRR3591710	White floral bud	11.314
	SRR3591711	White flower	17.458
	SRR3591712	Green floral bud	17.524
	SRR3591713	Yellow flower	9.810
SRP173429	SRR8316895	Juvenile bud stage	9.970
	SRR8316896	Juvenile bud stage	14.778
	SRR8316897	Juvenile bud stage	6.627
	SRR8316894	Third green stage	5.001
	SRR8316900	Third green stage	12.371
	SRR8316901	Third green stage	10.942
	SRR8316898	Complete white stage	3.417
	SRR8316899	Complete white stage	12.133
	SRR8316903	Complete white stage	5.238
	SRR8316902	Silver flowering stage	3.895
	SRR8316904	Silver flowering stage	5.368
	SRR8316905	Silver flowering stage	1.971
	SRR8316906	Gold flowering stage	8.088
	SRR8316907	Gold flowering stage	6.786
	SRR8316908	Gold flowering stage	11.312
SRP132670	SRR6706286	Control	9.854
	SRR6706287	Light intensity 50%	10.217
	SRR6706288	Light intensity 20%	8.404
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.371
	CNS0095593	Slightly white alabastrum(diploid) 2	12.076
	CNS0095594	Slightly white alabastrum(diploid) 3	13.530
	CNS0095595	Whole white alabastrum(diploid) 2	12.328
	CNS0095596	Whole white alabastrum(diploid) 3	13.788
	CNS0095597	Whole white alabastrum(diploid) 4	11.904
	CNS0095598	Silvery flower (diploied) 1	11.600
	CNS0095599	Silvery flower (diploied) 2	9.380
	CNS0095600	Silvery flower (diploied) 3	10.613
	CNS0095601	Golden flower (diploid) 1	11.219
	CNS0095602	Golden flower (diploid) 2	12.423
	CNS0095603	Golden flower (diploid) 3	11.391
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.690
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.727
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.099
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.609
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.430
	CNS0095610	Silvery flower (tetraploid) 1	13.364
	CNS0095611	Silvery flower (tetraploid) 2	16.799
	CNS0095612	Silvery flower (tetraploid) 3	9.671
	CNS0095613	Golden flower (tetraploid) 1	8.251
	CNS0095614	Golden flower (tetraploid) 2	12.849
	CNS0095615	Golden flower (tetraploid) 3	8.745
CRA001975	CRR073297	Stem 1	10.641
	CRR073298	Stem 2	11.881
	CRR073299	Stem 3	10.652
	CRR073300	Leaf 1	11.122
	CRR073301	Leaf 2	9.967
	CRR073302	Leaf 3	11.117
	CRR073303	Juvenile bud 1	10.872
	CRR073304	Juvenile bud 2	7.135
	CRR073305	Juvenile bud 3	10.476
	CRR073306	Third green 1	1.626
	CRR073307	Third green 2	2.071
	CRR073308	Third green 3	1.776
	CRR073309	Second white 1	4.197
	CRR073310	Second white 2	3.018
	CRR073311	Second white 3	3.438
	CRR073312	Silver flowering 1	3.829
	CRR073313	Silver flowering 2	2.961
	CRR073314	Silver flowering 3	2.443
	CRR073315	Gold flowering 1	6.169
	CRR073316	Gold flowering 2	6.269
	CRR073317	Gold flowering 3	5.621
	CRR073318	Tawny withering 1	10.195
	CRR073319	Tawny withering 2	11.190
	CRR073320	Tawny withering 3	10.314