Gene detail

Detail information of GWHGAAZE021606

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663715.1	0	PREDICTED: origin recognition complex subunit 5 [Vitis vinifera]
Swissprot	tr\|Q6EWX0\|ORC5_ARATH	0	Origin of replication complex subunit 5 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|F6GSP8\|F6GSP8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43303.1}
TAIR10	AT4G29910.1	1E-174	origin recognition complex protein 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57805806	57809983	-
GWHAAZE00000006	mRNA	57805806	57809983	-
GWHAAZE00000006	exon	57805806	57805859	-
GWHAAZE00000006	exon	57806358	57806691	-
GWHAAZE00000006	exon	57808631	57809053	-
GWHAAZE00000006	exon	57809151	57809983	-
GWHAAZE00000006	CDS	57809151	57809983	-
GWHAAZE00000006	CDS	57808631	57809053	-
GWHAAZE00000006	CDS	57806358	57806691	-
GWHAAZE00000006	CDS	57805806	57805859	-

Transcript Sequence
>GWHTAAZE021630 ATGGGTAAAGAGGAAAGTCCACAAATTAACAGAAGAACTACGAGATTATCCTCTTCGAGCCCCAATTTGAACAATGCAGTCGAAATACCGAAAAATAGTAATGCTCAATCTGTCACACTGGCTGATCTCGTGTTTGGTGAGGCACCTTTGAACTTTGACGATTTAGTTTGTAGTTTTCCTGGTAGGTGTACTCAGATTACTCAATTAATACACCTTTTGGGTCCCGTGGATTCTCCGATGATTCCACTCTTTATATACGGAGGTCCATCAACTGGCAAAACGAGCACTGTGCTTCAGATATTCAAACACCTAAACCGCCCGTTTGTTTATTCGAGTTGTCGTACCTGTTACAATCCCAGGATATTGTTTGAATCTATCCTGAACCAACTTTTGCTTCATAGAAAAGGGGAAGATAATGCCTATTCGAGTGCAAAACGCTGTGAAAAGCCATCTGATTTTGTTAACTTTCTACACGAAGCGTTGGCTAGTGTTGTAAATAATCTCAAGCAATATAAGGGGAAATCAAGCTCAAAGAAGTCGTCTAGACGCCCCAAAGGAAGGATGGTTTACTTGATAATTGATAATTTGGAGCTTGTTCAAGAGTGGGATAAGCCTTCGAGCATATTGCCATTTCTGTTTAAGCTTTATGATATTTTGAAGATGACTGATATTGGTCTGATATTTATTAGTAGTAGGTCACCTGATGCATATTACTCAGATACAGGTTATGTAGAGCCGGTTCCTATTTATTTTCCTGATTACACAGAAGATGATCTTCGTAAAATCTTCATAAGAAACCAAGAAAACCCAAAACTTTATTCATCTTTTCTTGATGTGGTATTGAAGCCTTTCTGTCGAGTAACAAGACGGGTCAATGAATTATCGATTGCCTTGACACAGTTATTTAAAAAATACTGTGAACCCTTAAGTGACACCGGAGTTGCTCCAAATGAAGAAATGAAGAGAAGGTTATTTAGTCATCTTCAACCACATATTTCGCCTTCTCTAAATGAGATATTCAGGGTTCTGTCTCGGCCTTCCCTTGAAACCGCAGCCAGCAAGGATACAATTAAGCAAAAAGCCAGTTCAAGGAAACTGAGAGTTTCTGAAGCTTTTGATGAGATAGACTTCCATATGTCTATATCTGCAAAGTATCTTCTGATTTCTGCATTCATAGCTTCAAGAAATCCAGCTACTCTTGATGCCTCATTGTTTGATTCAACTGGTGGTTCCAACAGTCGAAAACGGAAGAGGAAGAGCTCCGATAAGTCGATCGAGCAGAAAGAAGCTAAAGAACAAGAGTTACCCATGAAAGGACCTGGAACTTTTCCATTGGAGAGGTTGTTAGCCATATTTCAATGTATAACATCTGTTGCAGAATATTCACTCGATGAAGAACGAGAGGATGATGGGTTTGGAGGTGAAAGTGGGAATTGTGGACTGATGTCTGATGTTCTTTTACAACTATCAAGTCTTTGCAATGCTAATTTTATCAGCAAAGGAGGAAGCTGTCCATTGGAGGGATCAGCTCGCTACAGATCTACAGTCTCTGAAGATATGGCTCTGCAGGTAATCTTTTCAAGTCCTCGTGTTGCAAGGAGCCTGAAGTTTCCTCTGTCAAAGTACTTATTTAGAAGATATTGA

Network for GWHGAAZE021606

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13191.7	AAA_16	59	215	2.90E-10
PF14630.7	ORC5_C	249	543	3.50E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02607	ORC5	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0000808	cellular_component	origin recognition complex
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.532
	SRR3591706	second leaf	8.124
	SRR3591707	mature leaf	7.501
	SRR3591708	Shoot apex	12.855
	SRR3591709	Stem	11.005
	SRR3591710	White floral bud	9.269
	SRR3591711	White flower	10.640
	SRR3591712	Green floral bud	13.447
	SRR3591713	Yellow flower	6.444
SRP173429	SRR8316895	Juvenile bud stage	5.088
	SRR8316896	Juvenile bud stage	6.519
	SRR8316897	Juvenile bud stage	4.348
	SRR8316894	Third green stage	3.962
	SRR8316900	Third green stage	9.817
	SRR8316901	Third green stage	7.912
	SRR8316898	Complete white stage	3.133
	SRR8316899	Complete white stage	12.177
	SRR8316903	Complete white stage	5.084
	SRR8316902	Silver flowering stage	2.690
	SRR8316904	Silver flowering stage	4.994
	SRR8316905	Silver flowering stage	1.720
	SRR8316906	Gold flowering stage	6.632
	SRR8316907	Gold flowering stage	5.310
	SRR8316908	Gold flowering stage	6.864
SRP132670	SRR6706286	Control	3.280
	SRR6706287	Light intensity 50%	4.120
	SRR6706288	Light intensity 20%	4.517
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.838
	CNS0095593	Slightly white alabastrum(diploid) 2	4.963
	CNS0095594	Slightly white alabastrum(diploid) 3	4.084
	CNS0095595	Whole white alabastrum(diploid) 2	3.991
	CNS0095596	Whole white alabastrum(diploid) 3	4.875
	CNS0095597	Whole white alabastrum(diploid) 4	3.830
	CNS0095598	Silvery flower (diploied) 1	5.270
	CNS0095599	Silvery flower (diploied) 2	5.320
	CNS0095600	Silvery flower (diploied) 3	10.468
	CNS0095601	Golden flower (diploid) 1	4.259
	CNS0095602	Golden flower (diploid) 2	8.298
	CNS0095603	Golden flower (diploid) 3	6.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.015
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.553
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.484
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.465
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.213
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.952
	CNS0095610	Silvery flower (tetraploid) 1	2.871
	CNS0095611	Silvery flower (tetraploid) 2	2.272
	CNS0095612	Silvery flower (tetraploid) 3	1.997
	CNS0095613	Golden flower (tetraploid) 1	1.297
	CNS0095614	Golden flower (tetraploid) 2	2.131
	CNS0095615	Golden flower (tetraploid) 3	1.490
CRA001975	CRR073297	Stem 1	5.203
	CRR073298	Stem 2	4.570
	CRR073299	Stem 3	4.633
	CRR073300	Leaf 1	5.775
	CRR073301	Leaf 2	3.574
	CRR073302	Leaf 3	3.078
	CRR073303	Juvenile bud 1	2.825
	CRR073304	Juvenile bud 2	2.973
	CRR073305	Juvenile bud 3	4.728
	CRR073306	Third green 1	1.291
	CRR073307	Third green 2	0.680
	CRR073308	Third green 3	0.936
	CRR073309	Second white 1	2.030
	CRR073310	Second white 2	2.204
	CRR073311	Second white 3	2.190
	CRR073312	Silver flowering 1	1.624
	CRR073313	Silver flowering 2	2.203
	CRR073314	Silver flowering 3	1.542
	CRR073315	Gold flowering 1	2.589
	CRR073316	Gold flowering 2	2.405
	CRR073317	Gold flowering 3	2.577
	CRR073318	Tawny withering 1	3.917
	CRR073319	Tawny withering 2	2.739
	CRR073320	Tawny withering 3	3.680