Gene detail

Detail information of GWHGAAZE021613

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354974.1	1.0847E-131	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
COG	YP_001958461.1	6E-21	hypothetical protein Aasi_1443
Swissprot	tr\|Q3E8W4\|ANX2_ARATH	3E-98	Receptor-like protein kinase ANXUR2 (Precursor)
trEMBL	tr\|M1APN7\|M1APN7_SOLTU	4E-132	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400027429}
TAIR10	AT5G28680.1	3E-86	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57939378	57944494	-
GWHAAZE00000006	mRNA	57939378	57944494	-
GWHAAZE00000006	exon	57943357	57944494	-
GWHAAZE00000006	exon	57940316	57940657	-
GWHAAZE00000006	exon	57939378	57939406	-
GWHAAZE00000006	CDS	57943357	57944494	-
GWHAAZE00000006	CDS	57940316	57940657	-
GWHAAZE00000006	CDS	57939378	57939406	-

Transcript Sequence
>GWHTAAZE021637 ATGTTCAGTCCCCCGTCGGAGCACTTATCCCGTCGCTTTTCACTCGATGAGATTCTATCGGCGACCAACAATTTCGACGATTCCCTGATTATAGGTAAGGGTGGATTTGGTAACGTTTACAAAGGGAATATCATTGATAATAATGGTAATGGCGCATCATCATCATCATCTACTACTGTTGCTATAAAGCGTTTGAATCCCTCCTCTAAGCAAGGTGCCTCTGAGTTTTGGACTGAGATTACTATGCTTTCTAGGTTTCGACACAGCCACCTCGTTTCTTTGATTGGGTACTGTGATAATTGTGACGAAATGATCCTTGTCTATGAGTATATGGTTCGTGGATCTCTAGCTGATCATGTGCACAACATTAATAGAAAGAACTATAAGGGTAATAATTCCCCTTTATCTTGGGTGCAACGCCTCAAAATATGCATAGGGGCTGCTCGTGGATTGGACTACCTGCATACTGGTACGGCTATCCTCCAGAGAGTCATACATCTAGATGTGAAAAGCTCAAACATTCTATTGGACGAGAATTGGGCAGCTAAGATCTCCGATTTTGGATTGTCCAGAATTGGCCCTGCAGAGCAAGAGGTCACCGATGTTAGCACTCTGCACATCCAAGGCACATTAGGTTACATGGATCCCGATTATTTCTTGACTCACAGATTCACAAGGAAATCAGATGTGTATGCATTTGGGGTGGTATTGTTGGAAGTACTCTGCGAAAGGCCGGCTCTGGATCCAAGCCTTAATGAGGACCAATGTGGTCTTGCTGGATGGGGCCAAGAGTGCATCAACGAAGGAGCATCACATAAGATTATTGGGCCGAATTTGAAGTGGGAAATTTTGCCAAATTCTTTGATGGAATTTGTGCAAATTGCGGATCAATGCTTGCATAATCGTCCAAAGCAACGTCCTACAATGTCTGAGGTGGTGGCGAAACTTGAGCTTGCATTGGCATTTCAACTGCGCACTGATCTTGTGATCGAGGAGTATTCGTTTAATACTTGTTTGCCTATAAACAATCAAGAAAATCCGGTTTCTTATCGGGAGGATGACCAAATTGATAAGGTTCTACAGCAAGGCAATGCAAACAGCAAACAGTTTTCCCCAGTTGGAGCTCCGGTGGTCTGGGCTGCAAAGGATCCAGAGGTTCATCGAGTACAACGCAAGTGGTTTCTACTGCGTGAACTACAAGTTGCAACAGATAACTTTAGCAAAAGAAATATTTTGGGAAGAGGTGGATTCGGTAAGGTTTACAAAGGACGTTTGGCTGACGGCACCCTGGTGGCCGTAAAAAGGCTAAAAGAGGAGCGTACACAAGGTGGGAAGCTCCAGTTCGAAACGGAAGTCGAATTGTTAAGCAAAACTGTGCATCGTAATCTTTGTCGCTTGATAGGCTTTTGTACAACTCCCACAGAACATGTGCTCGTCTATCCTTATATGGCTAATGGAAGTGTCGCATCATCTTTAAGAGAGCGACCAGAAAGCATAACCCCCACTTGA

Network for GWHGAAZE021613

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0285

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	31	316	5.60E-46
PF07714.18	PK_Tyr_Ser-Thr	409	498	8.00E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.660
	SRR3591706	second leaf	1.163
	SRR3591707	mature leaf	1.723
	SRR3591708	Shoot apex	3.807
	SRR3591709	Stem	10.485
	SRR3591710	White floral bud	1.533
	SRR3591711	White flower	2.084
	SRR3591712	Green floral bud	1.380
	SRR3591713	Yellow flower	1.565
SRP173429	SRR8316895	Juvenile bud stage	34.185
	SRR8316896	Juvenile bud stage	35.714
	SRR8316897	Juvenile bud stage	2.992
	SRR8316894	Third green stage	3.468
	SRR8316900	Third green stage	7.594
	SRR8316901	Third green stage	18.383
	SRR8316898	Complete white stage	1.245
	SRR8316899	Complete white stage	24.179
	SRR8316903	Complete white stage	1.218
	SRR8316902	Silver flowering stage	3.893
	SRR8316904	Silver flowering stage	1.786
	SRR8316905	Silver flowering stage	1.392
	SRR8316906	Gold flowering stage	4.339
	SRR8316907	Gold flowering stage	3.876
	SRR8316908	Gold flowering stage	1.654
SRP132670	SRR6706286	Control	5.172
	SRR6706287	Light intensity 50%	6.016
	SRR6706288	Light intensity 20%	5.388
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.882
	CNS0095593	Slightly white alabastrum(diploid) 2	11.483
	CNS0095594	Slightly white alabastrum(diploid) 3	11.591
	CNS0095595	Whole white alabastrum(diploid) 2	9.355
	CNS0095596	Whole white alabastrum(diploid) 3	2.374
	CNS0095597	Whole white alabastrum(diploid) 4	7.425
	CNS0095598	Silvery flower (diploied) 1	21.278
	CNS0095599	Silvery flower (diploied) 2	25.193
	CNS0095600	Silvery flower (diploied) 3	17.126
	CNS0095601	Golden flower (diploid) 1	27.651
	CNS0095602	Golden flower (diploid) 2	29.539
	CNS0095603	Golden flower (diploid) 3	31.448
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.456
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.516
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.858
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.560
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.214
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.646
	CNS0095610	Silvery flower (tetraploid) 1	0.896
	CNS0095611	Silvery flower (tetraploid) 2	0.970
	CNS0095612	Silvery flower (tetraploid) 3	1.945
	CNS0095613	Golden flower (tetraploid) 1	0.382
	CNS0095614	Golden flower (tetraploid) 2	1.316
	CNS0095615	Golden flower (tetraploid) 3	0.413
CRA001975	CRR073297	Stem 1	11.148
	CRR073298	Stem 2	11.224
	CRR073299	Stem 3	8.442
	CRR073300	Leaf 1	13.557
	CRR073301	Leaf 2	20.127
	CRR073302	Leaf 3	7.167
	CRR073303	Juvenile bud 1	7.421
	CRR073304	Juvenile bud 2	9.665
	CRR073305	Juvenile bud 3	14.432
	CRR073306	Third green 1	3.933
	CRR073307	Third green 2	3.137
	CRR073308	Third green 3	4.114
	CRR073309	Second white 1	3.128
	CRR073310	Second white 2	6.352
	CRR073311	Second white 3	7.633
	CRR073312	Silver flowering 1	20.533
	CRR073313	Silver flowering 2	14.901
	CRR073314	Silver flowering 3	13.911
	CRR073315	Gold flowering 1	8.673
	CRR073316	Gold flowering 2	17.570
	CRR073317	Gold flowering 3	6.955
	CRR073318	Tawny withering 1	14.744
	CRR073319	Tawny withering 2	20.741
	CRR073320	Tawny withering 3	18.891