Gene detail

Detail information of GWHGAAZE021658

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN39982.1	1.25586E-52	Glutamyl-tRNA reductase 1, chloroplastic [Glycine soja]
COG	YP_007132349.1	3E-40	glutamyl-tRNA reductase
Swissprot	tr\|P49294\|HEM12_ARATH	6E-53	Glutamyl-tRNA reductase 2, chloroplastic (Precursor)
trEMBL	tr\|B7FLG0\|B7FLG0_MEDTR	1E-51	Glutamyl-tRNA reductase {ECO:0000256\|RuleBase:RU000584}
TAIR10	AT1G09940.1	6E-49	Glutamyl-tRNA reductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59074741	59080985	+
GWHAAZE00000006	mRNA	59074741	59080985	+
GWHAAZE00000006	exon	59074741	59075122	+
GWHAAZE00000006	exon	59076002	59076249	+
GWHAAZE00000006	exon	59076574	59077724	+
GWHAAZE00000006	exon	59079827	59079980	+
GWHAAZE00000006	exon	59080282	59080377	+
GWHAAZE00000006	exon	59080907	59080985	+
GWHAAZE00000006	CDS	59074741	59075122	+
GWHAAZE00000006	CDS	59076002	59076249	+
GWHAAZE00000006	CDS	59076574	59077724	+
GWHAAZE00000006	CDS	59079827	59079980	+
GWHAAZE00000006	CDS	59080282	59080374	+
GWHAAZE00000006	three_prime_UTR	59080375	59080377	+
GWHAAZE00000006	three_prime_UTR	59080907	59080985	+

Transcript Sequence
>GWHTAAZE021682 ATGGAGGCCGCAGCAGCAACATTGGTATGTAGTAAATTTGGGAACTTCAATCCGAAAGTGGAGATGATAAAATCCACCGTCGGTGTCGGTGGCGTATTCCGGCCACTAGTCCATCATCATCATCATCAAAGGGCAGTAGCGGTGGCTTTGGATCGTGTGGGGCCCTTTCCGGCGGCTTGTGCTGGTGGTTTATTCCGGCCACTAGTCCGTCATGATCATGGTCATCGTAGGGGAGTAGCGGTGGTGGTGGATAGTATGAGATCACCTGATCGTCGTCTGGTCTATGACTCGAAGAATTGCATAGTTGAGTCCTTGTGTTCAGATGAGCTTAATTTCGATTTCGACGCCAACTTATTCTTTCAATTAGCTGTTCCTTTGGAGAAATACCATATACATGGACTCGGACAACATCTTCTTGTTATTGGGCTTCCCTATCAGAATAAATATCCAACAGTTCTCAGGCGGCTTGAATTTTGTTGTCCAAGGATGCCCGTGGTAGTTTATGAGTTATCGAGTTTGCCCCACGTAGATGAAGCGGCGTTTATAAGTGGTTGCAGTCGATTTGAAATCTATGCTGTAGTTCACGACCCAAGTAATGCACTTGAAGAACTATGTGAGTGGATGGCCAAGGAAACTGGAATTCCTCTAAAAAAGTTGCGCTTATGCTGTTATTGGCATTTTGGACGCAATGCTTGGAGGCACCTATTTGAAGTGGCATCAGGTCTACGGAATCTCCTTCTGGACGGAAGGAAACCTAGAAAAGTGAAAGAAATAGCCGACGCTCTGGATGGCTTTAGAGGTTTCGGGAGGATTCTGAAGACACTGTTTGAGCACGCAATTTCAGTAGGTGAGCGGGTGGCAAGTGAAGTGAAACTGCTGAAAGCGGGTTTGTCAACTTCTTTGGCGTCAGCCACAGTTGAATTGGCCTTGGCCGAGTATAAGGATTTTGACCGGCAGTCGAAGGAGTACTTGTGGTGGGAACCCCGGCCGCAAACGAAAGCCGAGCCCCAAATACTTGTTATTGGTAGTGGGACGATGGGTGTGCTTTTGATCAAGTCGTTGTTTCATAAAGGCTACAAAACTATCACATTGTTAGAAGATATTTTGGACAATTTCGATACGTCGAGACCCTACCAGTTCTCAAGTCATGATCCCAGCTTATATGGAGGTGCCCTAGTAACCCACAAGCCTAGGCAAGATATGGCTTCATGCATTGCGGAAGCTGACATTGTGTTCACATGTAGGGAATTAAATTGTAATGATGATAAGCCCTTTGTTATGAAAGAGCACATTTTTTGCGATGGCTCCTCGAAAGATCCTCCTACTCATCTAAAATTGTTTGTTGACACTTCAATCCCTCATAATGTGGACGAGGATAGTGTGTCTCAGCTCTCTTTTTGTCGCATCCTTAACTTGGATGACATTGAAAAAGAAATATTGCGTAAGGAGAAAATGGAGGTTGGTAGGATGATTATGAAGCGGGTGAGGGGTTATATAGATGAAGAGGTTGGTAAATTTGAGAGTTGGTTTAACAAGGTGGGGGCTGTACATATTCTTCAGTCCCTTAGGGGATTTATGAAGCTTAAATACACTCGGGAGATGGAAGAATGCCGTCCTCCTCACGTTGTTGTTGGTTCATCAGACCATGATATCTGGAAACGACATGTCAACATGGTCAGCATAGTGAGGGCTGACCATTATATGGATAATTTGATTGCTCAACTTGTGAATGTTTTAGATTTATCTTTGGATGATTGTGGGGTTCCATTGCAACAGCTCAAATATGATGGTATGTTTATTAACCTTCTAAGCAGTGGATATGATTTGCAAAATCTATTTTTTGTCTTCAGTTCTCCTTTGAGGATCTTGCAACTGCTATGGGGTATCCATGGATATGATGTACTCAGTAGGAGAATAAACTTCTGGATAACCAAGTGGGGCTGTGAGGAGCTGGTGGGTGATGAGGATGGAGAGAGATCAGTGGCCTCTGTTGTTAAGGATCAATTGCATAAAGAAATGACTGTGTAGAAGGCCCTTCAAATGTCTGTCCTCTTGTAAATACTTGACGGCTGCCAAACTAGTAGTATAATTATTTAGGAATGGGATTGAT

Network for GWHGAAZE021658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05201.16	GlutR_N	141	289	2.80E-17
PF01488.21	Shikimate_DH	335	477	4.50E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02492	hemA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0033014	biological_process	tetrapyrrole biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0008883	molecular_function	glutamyl-tRNA reductase activity
GO:0050661	molecular_function	NADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.490
	SRR3591706	second leaf	3.990
	SRR3591707	mature leaf	6.545
	SRR3591708	Shoot apex	2.736
	SRR3591709	Stem	4.268
	SRR3591710	White floral bud	2.380
	SRR3591711	White flower	2.383
	SRR3591712	Green floral bud	4.413
	SRR3591713	Yellow flower	1.210
SRP173429	SRR8316895	Juvenile bud stage	1.715
	SRR8316896	Juvenile bud stage	3.380
	SRR8316897	Juvenile bud stage	0.296
	SRR8316894	Third green stage	0.620
	SRR8316900	Third green stage	0.474
	SRR8316901	Third green stage	0.327
	SRR8316898	Complete white stage	0.081
	SRR8316899	Complete white stage	0.588
	SRR8316903	Complete white stage	0.286
	SRR8316902	Silver flowering stage	0.012
	SRR8316904	Silver flowering stage	0.033
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.329
SRP132670	SRR6706286	Control	0.098
	SRR6706287	Light intensity 50%	0.263
	SRR6706288	Light intensity 20%	0.324
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.793
	CNS0095593	Slightly white alabastrum(diploid) 2	0.519
	CNS0095594	Slightly white alabastrum(diploid) 3	0.509
	CNS0095595	Whole white alabastrum(diploid) 2	0.179
	CNS0095596	Whole white alabastrum(diploid) 3	0.420
	CNS0095597	Whole white alabastrum(diploid) 4	0.156
	CNS0095598	Silvery flower (diploied) 1	0.033
	CNS0095599	Silvery flower (diploied) 2	0.051
	CNS0095600	Silvery flower (diploied) 3	0.077
	CNS0095601	Golden flower (diploid) 1	0.161
	CNS0095602	Golden flower (diploid) 2	0.030
	CNS0095603	Golden flower (diploid) 3	0.028
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.556
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.791
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.170
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.302
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.038
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.236
	CNS0095610	Silvery flower (tetraploid) 1	0.104
	CNS0095611	Silvery flower (tetraploid) 2	0.028
	CNS0095612	Silvery flower (tetraploid) 3	0.021
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.015
CRA001975	CRR073297	Stem 1	1.013
	CRR073298	Stem 2	1.345
	CRR073299	Stem 3	0.907
	CRR073300	Leaf 1	0.034
	CRR073301	Leaf 2	0.165
	CRR073302	Leaf 3	0.098
	CRR073303	Juvenile bud 1	0.019
	CRR073304	Juvenile bud 2	0.018
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.005
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.071
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.051
	CRR073319	Tawny withering 2	0.156
	CRR073320	Tawny withering 3	0.055