Gene detail

Detail information of GWHGAAZE021689

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009593508.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 [Nicotiana tomentosiformis]
COG	YP_006528519.1	2E-24	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|Q40541\|NPK1_TOBAC	0	Mitogen-activated protein kinase kinase kinase NPK1
trEMBL	tr\|K4AXM0\|K4AXM0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g079750.2.1}
TAIR10	AT3G06030.1	3E-180	NPK1-related protein kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59589219	59603462	+
GWHAAZE00000006	mRNA	59589219	59603462	+
GWHAAZE00000006	exon	59589219	59589591	+
GWHAAZE00000006	exon	59589709	59589747	+
GWHAAZE00000006	exon	59590215	59590475	+
GWHAAZE00000006	exon	59590771	59590851	+
GWHAAZE00000006	exon	59590947	59591024	+
GWHAAZE00000006	exon	59591155	59591237	+
GWHAAZE00000006	exon	59592888	59592969	+
GWHAAZE00000006	exon	59593104	59593225	+
GWHAAZE00000006	exon	59593874	59593913	+
GWHAAZE00000006	exon	59594027	59594229	+
GWHAAZE00000006	exon	59600370	59600430	+
GWHAAZE00000006	exon	59600687	59600923	+
GWHAAZE00000006	exon	59602020	59602339	+
GWHAAZE00000006	exon	59602427	59602494	+
GWHAAZE00000006	exon	59603380	59603462	+
GWHAAZE00000006	five_prime_UTR	59589219	59589285	+
GWHAAZE00000006	CDS	59589286	59589591	+
GWHAAZE00000006	CDS	59589709	59589747	+
GWHAAZE00000006	CDS	59590215	59590475	+
GWHAAZE00000006	CDS	59590771	59590851	+
GWHAAZE00000006	CDS	59590947	59591024	+
GWHAAZE00000006	CDS	59591155	59591237	+
GWHAAZE00000006	CDS	59592888	59592969	+
GWHAAZE00000006	CDS	59593104	59593225	+
GWHAAZE00000006	CDS	59593874	59593913	+
GWHAAZE00000006	CDS	59594027	59594229	+
GWHAAZE00000006	CDS	59600370	59600430	+
GWHAAZE00000006	CDS	59600687	59600923	+
GWHAAZE00000006	CDS	59602020	59602339	+
GWHAAZE00000006	CDS	59602427	59602494	+
GWHAAZE00000006	CDS	59603380	59603462	+

Transcript Sequence
>GWHTAAZE021713 CCAATAATCAATTCACTCACTTCAATAAGATCAATCTTCACTGTATAATCACGATCACAAACTCCAAATGCAAGACTTCATCGGCTCAGTCCGTCGTTCTCTCGTATTCAAACCCTCCGGCACCGGAGATGACGGTAGCGCCTTCGGAGGATTCGTTGAGAAGATCGGATCAAGTATTCGTAAATCGAGGATCGGACTGTTCTCGAAGCCTCCGGTGCCGGCGCTTCCGGCGATTCCGAAATCCGATTCAATTAGAAAGGATGATGCCCCGCCGATCCGGTGGCGGAAAGGGGAATTGATTGGTTGCGGTGCGTTTGGTAGGGTGTATATGGGGATGAATCTGGATTCTGGAGAGTTACTTGCTGTTAAGCAGGTTTCAATTGCTAATAGTGCCTCGAAAGAAAAAACTCAGGCTCACATTAGGGAGCTTGAGGAAGAAGTGAAGCTACTAAAGAATCTTTCTCATCCAAATATTGTCGTGAGTATGATTATTATTTCTTATATTGTGGAAACGGTGCTTGCATGTCTTATAAGTTCTAAGCCCTTTTCTTTTGGCTTCCAGAGATATTTGGGAACTGCAAGAGAGGAGGAATCTTTAAATATTTTGTTGGAATTCGTTCCAGGTGGATCTATATCATCACTCCTGGGAAAATTTGGATCCTTCCCTGAATCCGTTATAAGAATGTACACAAAACAGTTGCTACTGGGCTTGGAATACCTGCACAAAAATGGTATCATGCACAGGGACATTAAGGGTGCAAATATCCTAGTTGACAATAAGGGGTGCATTAAACTTGCAGACTTTGGTGCATCTAAGAAAGTTGTTGAACTGGCTACAATGACTGGTGCCAAGTCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTACAAACTGGGCATAGCTTCTCTGCTGACATATGGAGTGTTGGATGTACTGTTATCGAAATGGCTACTGGAAAACCTCCTTGGAGCCAGCAGTATCAGGAGGTTGCTGCTCTTTTCCATATAGGGACAACAAAATCTCATCCACCCATCCCAGATCATCTTTCCGCCGAGGCTAAGGATTTTCTGTTAAAGTGCTTACAGAAGTACACTCACGAATCCTTCTGGGAACCAGACTTCAGGCTTTCTGCATCAGATTTGCTGCAGCACCCTTTTGTCACCGGTGAATATTTGGAAAACCATCCGGTTCTTCGGACTCCACTTGTGGTCAGTATAGTGGCATTAAAACTTATTAGGTTCAATTACATAGCTCTATATTTGCCTTCTTCTGCGCATCTCGGTAATCTTACCAATCAACAGGGCAATTCTGGGAACCAAATGGCAGCATCTAGGATGGACTTTACAAACTCCATGAACCCGGAGATGAGGACAATTGGCACAGATATGAAGGGTGTTTGTGATATGGATAGCAGCTTTAATCCTATGAGTGAACCAAATGATGATTGGCCATGTAAGTTTGATGATAGTCCAGAATTGGCGAGAAGTGGAATGAAGTCAATTTCTGGTCAAACAATTGATAAGCCTCCTGAGAGCCTAGGAACATCTTGTAAAATGGATAATGACTTCACATTCCCAAGTGGGCCGGTCGCAGCTGAGGATGATGATGAAGTTACCGAGTCAAAAATTAGAGCCTTCCTCGATGAAAAGGCTTTGGATCTGAAGAAGATGCAGACGCCTCTATACGAACAGTTCTACAACTCATTAAATGGAGCAGGTACTCCAAACGCTGTTGGAACTGAAAATAAAGAGAACCTTTCAAATAACATGAACTTGCCTCCTAAAAGCAAGTCACCAAACCGGGTCCCTAGCAGAAGACTATCTTCAGCCATTGAAGTCACCTATACTCCTAGTCCTGGGGCCCATTCCAAACGGGTATCAAATATTGGCGGTCTAAATGATCAAATCATTCAGGAAGTTCAGTCACCACAGCATGTTCTTGGTTCTCAACAGGAGCCCAGTAGCCCAAGTGCAAGCTTCTCTGAGAGACAGAGAAAATGGAAAGAAGAGCTTGACGAAGAGCTTGAGAGGAAACGGGGTGTGGTAAAGACATCATCACCAAAGGATCGGGTTGTAAGTCGACAAAGAGATCGATTGAAGTTCGCATTTCCAGGCAAATAA

Network for GWHGAAZE021689

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	73	368	1.00E-62

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.649
	SRR3591706	second leaf	3.251
	SRR3591707	mature leaf	1.117
	SRR3591708	Shoot apex	27.303
	SRR3591709	Stem	11.806
	SRR3591710	White floral bud	1.926
	SRR3591711	White flower	1.176
	SRR3591712	Green floral bud	3.852
	SRR3591713	Yellow flower	0.297
SRP173429	SRR8316895	Juvenile bud stage	7.370
	SRR8316896	Juvenile bud stage	7.790
	SRR8316897	Juvenile bud stage	4.664
	SRR8316894	Third green stage	3.372
	SRR8316900	Third green stage	4.760
	SRR8316901	Third green stage	3.829
	SRR8316898	Complete white stage	0.936
	SRR8316899	Complete white stage	6.049
	SRR8316903	Complete white stage	1.197
	SRR8316902	Silver flowering stage	0.492
	SRR8316904	Silver flowering stage	0.736
	SRR8316905	Silver flowering stage	0.211
	SRR8316906	Gold flowering stage	1.470
	SRR8316907	Gold flowering stage	1.538
	SRR8316908	Gold flowering stage	1.058
SRP132670	SRR6706286	Control	3.862
	SRR6706287	Light intensity 50%	4.155
	SRR6706288	Light intensity 20%	5.111
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.049
	CNS0095593	Slightly white alabastrum(diploid) 2	4.131
	CNS0095594	Slightly white alabastrum(diploid) 3	3.047
	CNS0095595	Whole white alabastrum(diploid) 2	2.232
	CNS0095596	Whole white alabastrum(diploid) 3	2.165
	CNS0095597	Whole white alabastrum(diploid) 4	2.325
	CNS0095598	Silvery flower (diploied) 1	3.784
	CNS0095599	Silvery flower (diploied) 2	5.135
	CNS0095600	Silvery flower (diploied) 3	2.364
	CNS0095601	Golden flower (diploid) 1	2.313
	CNS0095602	Golden flower (diploid) 2	2.030
	CNS0095603	Golden flower (diploid) 3	1.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.966
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.987
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.261
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.157
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.855
	CNS0095610	Silvery flower (tetraploid) 1	1.207
	CNS0095611	Silvery flower (tetraploid) 2	0.904
	CNS0095612	Silvery flower (tetraploid) 3	1.068
	CNS0095613	Golden flower (tetraploid) 1	0.491
	CNS0095614	Golden flower (tetraploid) 2	0.611
	CNS0095615	Golden flower (tetraploid) 3	0.139
CRA001975	CRR073297	Stem 1	7.201
	CRR073298	Stem 2	7.544
	CRR073299	Stem 3	10.557
	CRR073300	Leaf 1	5.389
	CRR073301	Leaf 2	4.414
	CRR073302	Leaf 3	4.332
	CRR073303	Juvenile bud 1	6.097
	CRR073304	Juvenile bud 2	2.756
	CRR073305	Juvenile bud 3	5.264
	CRR073306	Third green 1	0.747
	CRR073307	Third green 2	0.739
	CRR073308	Third green 3	0.635
	CRR073309	Second white 1	0.608
	CRR073310	Second white 2	0.355
	CRR073311	Second white 3	0.426
	CRR073312	Silver flowering 1	0.336
	CRR073313	Silver flowering 2	0.569
	CRR073314	Silver flowering 3	0.338
	CRR073315	Gold flowering 1	1.243
	CRR073316	Gold flowering 2	1.675
	CRR073317	Gold flowering 3	2.541
	CRR073318	Tawny withering 1	14.757
	CRR073319	Tawny withering 2	11.016
	CRR073320	Tawny withering 3	21.176