Gene detail

Detail information of GWHGAAZE021690

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009758574.1	0	PREDICTED: probable ATP-dependent DNA helicase CHR12 [Nicotiana sylvestris]
COG	YP_007297659.1	1E-81	DNA/RNA helicase, superfamily II, SNF2 family
Swissprot	tr\|F4J9M5\|CHR12_ARATH	0	Probable ATP-dependent DNA helicase CHR12
trEMBL	tr\|A0A067GHE1\|A0A067GHE1_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO74726.1}
TAIR10	AT3G06010.1	0	Homeotic gene regulator

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59658959	59693112	+
GWHAAZE00000006	mRNA	59658959	59693112	+
GWHAAZE00000006	exon	59658959	59659030	+
GWHAAZE00000006	exon	59660750	59660939	+
GWHAAZE00000006	exon	59661016	59661186	+
GWHAAZE00000006	exon	59661296	59661471	+
GWHAAZE00000006	exon	59661567	59661725	+
GWHAAZE00000006	exon	59662533	59662673	+
GWHAAZE00000006	exon	59662741	59662832	+
GWHAAZE00000006	exon	59664256	59664391	+
GWHAAZE00000006	exon	59666926	59667020	+
GWHAAZE00000006	exon	59667997	59668112	+
GWHAAZE00000006	exon	59668224	59668353	+
GWHAAZE00000006	exon	59670237	59670291	+
GWHAAZE00000006	exon	59675444	59675600	+
GWHAAZE00000006	exon	59676770	59676834	+
GWHAAZE00000006	exon	59679496	59679684	+
GWHAAZE00000006	exon	59682162	59682263	+
GWHAAZE00000006	exon	59684031	59684429	+
GWHAAZE00000006	exon	59684969	59685228	+
GWHAAZE00000006	exon	59685413	59685631	+
GWHAAZE00000006	exon	59688003	59688210	+
GWHAAZE00000006	exon	59688308	59688461	+
GWHAAZE00000006	exon	59689810	59690412	+
GWHAAZE00000006	exon	59692292	59693112	+
GWHAAZE00000006	CDS	59658959	59659030	+
GWHAAZE00000006	CDS	59660750	59660939	+
GWHAAZE00000006	CDS	59661016	59661186	+
GWHAAZE00000006	CDS	59661296	59661471	+
GWHAAZE00000006	CDS	59661567	59661725	+
GWHAAZE00000006	CDS	59662533	59662673	+
GWHAAZE00000006	CDS	59662741	59662832	+
GWHAAZE00000006	CDS	59664256	59664391	+
GWHAAZE00000006	CDS	59666926	59667020	+
GWHAAZE00000006	CDS	59667997	59668112	+
GWHAAZE00000006	CDS	59668224	59668353	+
GWHAAZE00000006	CDS	59670237	59670291	+
GWHAAZE00000006	CDS	59675444	59675600	+
GWHAAZE00000006	CDS	59676770	59676834	+
GWHAAZE00000006	CDS	59679496	59679684	+
GWHAAZE00000006	CDS	59682162	59682263	+
GWHAAZE00000006	CDS	59684031	59684429	+
GWHAAZE00000006	CDS	59684969	59685228	+
GWHAAZE00000006	CDS	59685413	59685631	+
GWHAAZE00000006	CDS	59688003	59688210	+
GWHAAZE00000006	CDS	59688308	59688461	+
GWHAAZE00000006	CDS	59689810	59690412	+
GWHAAZE00000006	CDS	59692292	59692941	+
GWHAAZE00000006	three_prime_UTR	59692942	59693112	+

Transcript Sequence
>GWHTAAZE021714 ATGAAAGTTCAGGCCAAATTTCACTTGTCAAGCTGTGCTCCATGCATATCACACATAACCAAGCTCCCCCGGGAGGATGATGTAGAGAGGCCTCTTGTTTCTGAAGACTTGGATCTGGTTCAAAATCAGCGCACTGAGGTTTCTAGGAAGTATGTTCTAGCGGGGGCGTTTCCTCAAAGTCTAAGGAGTTTTCTGTCACCCCGGGGCCACGGACTTGCTTACAAGCAAAGGCTTCAACCTACAGCCCCCCAGTTGACCCACAGTGATAGCTTTGTACTTGATATTCCCGACAGTTCCGAAGATATTTCTAATTCTCAGACGCTTTCATTGGCGACAAACCACTCTTCTGAACACCAGAAATATTATCAATCAAGATTTGGTGAAGACGATGATAAGCTAAAAGCTTTTGTTCCTAAACATACTGTAGATCGAAGAAGCATTCTCATGCTAGAGGTTACTTCTGGTCCTTCTCGTGGGCTTCGTTGTTCGATAGAGTCAACAAATACATCTGGGCTTCCACTGACTCTTGGAAGAGTTTCACCAAGTAATTTTATAGTAAAGGACTCGGAGGTATCAGGAAAGCACGCAATTATAGATTGGAATTCAAATAAGCTGAAGTGGGAGCTGGTCGACATGGGTAGCTTAAATGGAACACTTGTAAATTCCCAGGCAGTCCACCATCCTCATTCCGGAAGTAGACATCGAGGTGATCCAATTGAGCTCACAAGTGGAGATGTAATAACTCTTGGCACAATTTCAAACATTATTGTTCAGATTACATCTCAAACAGAACAGATTCCATTTGGTGTTGGTTTGGCTTCAGATCCCATGGCTATGCGTCGAGGAGCAAAGAAGCTGCCCATGGAAGATGTCTGCTTTTATCGGTGGCGTCTTCCTGGGGCTGATCAGGATAATCCTCGAAAATTGCTCATCTTTCAGTTTGGAGTGTTTGGTATATGTGATGGACATGGTGGAGCAGGTGCTGCACTATCAGCTAGCAAAATAATCCCCGAGATGGTTGCTAGTATCTTGTCGGACTCATTCAGAAGAGAGAGGGTTTTATCACAACGTGATGCTTCAGATGTCCTTAGAGAAGTGTTTTCTCAGACAGAAGCATGCATGAATCACTTATATGAGGGCTGTACTGCTACAGTGCTTCTGGTTTGGTCTGATGGTCATGGAAATTTCTTTACGCAATGTGCAAATGTTGGAGACTCAGCCTGTGTTGTAAATATTGATGGGAAGCAGATAAAGATGACTGATGACCACAGAATAACCAGTCATTCTGAAAGACTCCGTATCCAAGCAACAGGAGACCCTTTGAAAGATGGGGAAACACGATTATGCGGTTTAAACCTTGCTCGGATGCTTGGTGACAAATTTCTTAAACAACAGGATGCTCGTTTCAGTTCAGAACCTTATATAAGCCACGTTGTATATATACATCAAGCAAGCACAGGCTTTGCCCTATTAGCTAGTGATGGCTTTTGGGATGTGGTTAGCCTCAAGAAGGCAGTTCAGCTTGTCCACCAGCATGGTTCCCTAGTCTCAAATGAAGAAGATTTGATGACAGACCTTGAGGATGCACTGGCGCATCAAAGACCAAGCTGCCTGTCAGGTTTTAAATTGACAGACTCAAGGGAAAAACGTCTCCAGAGTCTCCTCAAGCATCGTTTAAGTGAACTCGAAGCTTTGCCAACAAGCAGAGGTGAGGACCTGCAGTCGAAGTGCTTGCTTGAACTCTATGGCCTTAAGCTAGCAGAGTTGCAGGCCAAGGTTCGATCTGATGTGAGTTCAGAATACTTGCTTCGTGTGAATTGTGCGTCTCCAGACAAGCAATTGTTTGACTGGGGCAGGATGCGAATGCTTCGTCCTTTATATGGCGTTGGGGATGCTTTTGCCCTGGATGCTGATAATCACTTGAAGAAGAAACGGGATGCTGAGAGGCTGTCAAGATTAGAGGAGGAGGAGAAGAATAGAATCGAAACAAAGAAAAGGAAATTCTTTGCCGAAGTACTTAATGCAGCTCGAGAACTCCAAGTGCAAGGATGGCATGGAAGGCAAAGGCAACGTGCTACACGGGCAGAGAAATTGAGGTTCCAAGCTCTAAAAGCCGATGATCAGGAAGCCTATATGAAAATGGTCGAAGAGAGCAAGAACGAGCGGCTAAAAATGCTTTTAGGAAAAACCAATGAGCTCCTTGTTCGTTTGGGAGCAGCTGTTCAACGTCAAAAAGATTCCGAACATGATGGCATTGAACCCTTGAATACACCAGTACCTGAATTGCCTAAGTTGAATGATTTAAAGACTGGAACACTCTGGGAGCCGGTTCCTGAGGAAGAAAATGAAACACAAGATACCGAATTAGTTGATAGTGATCCTTCAGGCGATTTACTTGAAGGTCAACGGCAGTATAATTCAATTATTCATTCAATAGAGGAGAAGGTAACAGAGCAGCCATCAATGCTTCAGGGTGGTGAATTAAGGACCTACCAAATAGAAGGGCTTCAATGGATGTTGTCTTTGTTCAATAATAATCTTAACGGAATATTAGCAGACGAGATGGGTTTGGGGAAGACAATTCAAACCATTGCCTTGATTGCATATCTTATGGAAAACAAGAGTGTGACCGGGCCCTACTTGATTGTTGCCCCAAAGGCTGTACTACCAAATTGGATGAATGAATTCTCTACTTGGGCTCCTAGCATTGTTGCTATTCTTTATGATGGGCGTCCAGATGAGAGAAAGGCAATGAGGGAAGACTACTTACAACAGGAGAAATTCAATGTGGTGATCACCCACTATGATCTTATTATGAGAGACAAAACATATTTGAAGAAAATCCACTGGTACTACGTGGTTGTAGATGAAGGACATAGGCTAAAAAATCATGAATCTGCTCTTGCACGGACTCTTGTCTCAGGCTACCAGTTCAAGCGAAGACTTCTGTTGACTGGCACCCCAATACAGAATAGTTTACAAGAATTGTGGGCCCTGCTTAATTTTCTTCTTCCAGATACATTTAATTCTGTTGATAATTTCGAGGAGTGGTTTAATGCACCTTTCGCAGATCGGTGTGATGTTTCTCTGACAGATGAAGAAGAGTTATTGATCATTCACAGATTGCACCAAGTTATAAGGCCATTCATATTGCGGAGGAAGAAAGATGAAGTGGAGAAATACCTTCCTCAGAAAACACAAGTCATATTGAAATGTGACATGTCAGCATGGCAAAAAGTATATTATAAGCAAGTAACTGATCAAGGCAGGGTTGGACTGGATAACGGAACTGGGAAGTCTAGGAGTCTACAAAACCTGTCGATGCAGCTGAGGAAATGTTGTAACCACCCTTACCTATTTGTGGATGGATATAATTATTGGCGCAAAGAGGAGATTGTCAAAGCATCAGGAAAATTCGAGCTACTTGACCGTTTACTCCCCAAACTACACCGAGCAGGTCATCGAGTCCTCCTTTTCTCACAAATGACCCGTCTGATGGACGTCCTTGAGATTTATCTCCAACTTCACAATTTTAAGTATCTTAGACTCGATGGCTCAACAAAAACTGAGGAAAGAGGGTCGTTGCTAAAGCAATTTAATGCTCCAGACTCACCTTTTTTCATGTTCCTATTGAGTACTCGTGCCGGTGGTCTTGGTTTGAACTTGCAGACTGCAGATACTGTGATTATTTTCGACAGCGATTGGAACCCGCAAATGGACCAACAGGCAGAGGACCGAGCACATCGTATTGGGCAAAAGAAGGAAGTGAGGGTCTTTGTCTTGGTTAGCGTTGGATCAATTGAAGAGGTGATCTTAGAGCGTGCAAAACAGAAGATGGGGATTGATGCAAAGGTCATCCAGGCCGGATTGTTCAATACGACTTCCACAGCCCAAGACAGGAGAGCGATGTTGGAGGACATCATGCGTAGAGGAACAAGCTCGCTCGGTACAGATGTGCCAAGCGAGCGGGAAATCAACCGCCTAGCGGCCCGTTCGGATGAAGAGTACTGGCTATTCGAAAAAATGGACGAGGAGAGAAGGCAAAAGGAGAGTTACCGGTCTCGCCTCATGGAAGATCATGAGGTACCCGATTGGGCCTACTCCGTAGCTGAAACTGATACTGGAAAGGGAAAAGGATTCGACTACGAGAGCGCCAACATCACTGGAAAACGCCGTAGGAAGGAAGTGGTTTACGCCGATACGCTCAGTGAGCTCCAATTCATGAAGGCGGTTGAAAATGGAGACGATTTGTTTAAGCATTCAGTTAAGAGAAAAAGGAGAGAATCGGTTTCTCTTGGGGGCAATGAGTTTCCTAGTAATAGTAGTGTGATTGTGGAACTGAAGAGTGAAATCGTGTCTCCAGCAGCTAGTGAACCAATGAGCGAAAATGCGTCTGGTTTGAGCCTGAAAAGGCCGAGGTCCGAAGCGGCTAGTTCGCCAGAGGACGAATATCAAGGCGGCGATGAGGGTGATATAATGAAAGGGCATGTACTGACGTGGAAGCCACATAAGAAGAAGAGATCGAGGTTAGTGTCGTAATTTCATCTAGCACCGGCAATCTGTACATAAACTTTGAACTGTATCATTAGCTGTGTCTAAATATGGTGAATCCATGGCCTAAATATCTACCTTAAACTAGTCTGTATTCTATATATACTTAGAAGGTGTAAACATGTTTTTCAGCTTATGAAACCTTTTACAATTAACCAA

Network for GWHGAAZE021690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00498.27	FHA	175	250	5.70E-18
PF00481.22	PP2C	283	517	5.90E-40
PF00176.24	SNF2_N	844	1119	1.00E-70
PF00271.32	Helicase_C	1138	1251	6.10E-20
PF14619.7	SnAC	1345	1408	9.30E-10

Protein Sequence

>GWHPAAZE021703
MKVQAKFHLSSCAPCISHITKLPREDDVERPLVSEDLDLVQNQRTEVSRKYVLAGAFPQSLRSFLSPRGHGLAYKQRLQPTAPQLTHSDSFVLDIPDSSEDISNSQTLSLATNHSSEHQKYYQSRFGEDDDKLKAFVPKHTVDRRSILMLEVTSGPSRGLRCSIESTNTSGLPLTLGRVSPSNFIVKDSEVSGKHAIIDWNSNKLKWELVDMGSLNGTLVNSQAVHHPHSGSRHRGDPIELTSGDVITLGTISNIIVQITSQTEQIPFGVGLASDPMAMRRGAKKLPMEDVCFYRWRLPGADQDNPRKLLIFQFGVFGICDGHGGAGAALSASKIIPEMVASILSDSFRRERVLSQRDASDVLREVFSQTEACMNHLYEGCTATVLLVWSDGHGNFFTQCANVGDSACVVNIDGKQIKMTDDHRITSHSERLRIQATGDPLKDGETRLCGLNLARMLGDKFLKQQDARFSSEPYISHVVYIHQASTGFALLASDGFWDVVSLKKAVQLVHQHGSLVSNEEDLMTDLEDALAHQRPSCLSGFKLTDSREKRLQSLLKHRLSELEALPTSRGEDLQSKCLLELYGLKLAELQAKVRSDVSSEYLLRVNCASPDKQLFDWGRMRMLRPLYGVGDAFALDADNHLKKKRDAERLSRLEEEEKNRIETKKRKFFAEVLNAARELQVQGWHGRQRQRATRAEKLRFQALKADDQEAYMKMVEESKNERLKMLLGKTNELLVRLGAAVQRQKDSEHDGIEPLNTPVPELPKLNDLKTGTLWEPVPEEENETQDTELVDSDPSGDLLEGQRQYNSIIHSIEEKVTEQPSMLQGGELRTYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLMENKSVTGPYLIVAPKAVLPNWMNEFSTWAPSIVAILYDGRPDERKAMREDYLQQEKFNVVITHYDLIMRDKTYLKKIHWYYVVVDEGHRLKNHESALARTLVSGYQFKRRLLLTGTPIQNSLQELWALLNFLLPDTFNSVDNFEEWFNAPFADRCDVSLTDEEELLIIHRLHQVIRPFILRRKKDEVEKYLPQKTQVILKCDMSAWQKVYYKQVTDQGRVGLDNGTGKSRSLQNLSMQLRKCCNHPYLFVDGYNYWRKEEIVKASGKFELLDRLLPKLHRAGHRVLLFSQMTRLMDVLEIYLQLHNFKYLRLDGSTKTEERGSLLKQFNAPDSPFFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRRAMLEDIMRRGTSSLGTDVPSEREINRLAARSDEEYWLFEKMDEERRQKESYRSRLMEDHEVPDWAYSVAETDTGKGKGFDYESANITGKRRRKEVVYADTLSELQFMKAVENGDDLFKHSVKRKRRESVSLGGNEFPSNSSVIVELKSEIVSPAASEPMSENASGLSLKRPRSEAASSPEDEYQGGDEGDIMKGHVLTWKPHKKKRSRLVS

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003824	molecular_function	catalytic activity
GO:0042393	molecular_function	histone binding
GO:0043169	molecular_function	cation binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.950
	SRR3591706	second leaf	4.301
	SRR3591707	mature leaf	5.802
	SRR3591708	Shoot apex	11.798
	SRR3591709	Stem	7.313
	SRR3591710	White floral bud	10.830
	SRR3591711	White flower	11.783
	SRR3591712	Green floral bud	10.246
	SRR3591713	Yellow flower	8.165
SRP173429	SRR8316895	Juvenile bud stage	5.438
	SRR8316896	Juvenile bud stage	8.411
	SRR8316897	Juvenile bud stage	3.731
	SRR8316894	Third green stage	3.259
	SRR8316900	Third green stage	7.783
	SRR8316901	Third green stage	8.035
	SRR8316898	Complete white stage	2.369
	SRR8316899	Complete white stage	9.198
	SRR8316903	Complete white stage	4.650
	SRR8316902	Silver flowering stage	2.965
	SRR8316904	Silver flowering stage	5.504
	SRR8316905	Silver flowering stage	2.424
	SRR8316906	Gold flowering stage	6.402
	SRR8316907	Gold flowering stage	6.190
	SRR8316908	Gold flowering stage	7.984
SRP132670	SRR6706286	Control	7.752
	SRR6706287	Light intensity 50%	7.613
	SRR6706288	Light intensity 20%	7.093
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.866
	CNS0095593	Slightly white alabastrum(diploid) 2	6.370
	CNS0095594	Slightly white alabastrum(diploid) 3	6.204
	CNS0095595	Whole white alabastrum(diploid) 2	8.094
	CNS0095596	Whole white alabastrum(diploid) 3	7.499
	CNS0095597	Whole white alabastrum(diploid) 4	9.302
	CNS0095598	Silvery flower (diploied) 1	6.418
	CNS0095599	Silvery flower (diploied) 2	6.065
	CNS0095600	Silvery flower (diploied) 3	6.792
	CNS0095601	Golden flower (diploid) 1	6.824
	CNS0095602	Golden flower (diploid) 2	7.817
	CNS0095603	Golden flower (diploid) 3	8.191
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.995
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.977
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.501
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.939
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.648
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.115
	CNS0095610	Silvery flower (tetraploid) 1	7.672
	CNS0095611	Silvery flower (tetraploid) 2	7.137
	CNS0095612	Silvery flower (tetraploid) 3	6.177
	CNS0095613	Golden flower (tetraploid) 1	4.056
	CNS0095614	Golden flower (tetraploid) 2	6.479
	CNS0095615	Golden flower (tetraploid) 3	6.669
CRA001975	CRR073297	Stem 1	7.914
	CRR073298	Stem 2	7.548
	CRR073299	Stem 3	7.745
	CRR073300	Leaf 1	9.402
	CRR073301	Leaf 2	7.274
	CRR073302	Leaf 3	5.437
	CRR073303	Juvenile bud 1	6.999
	CRR073304	Juvenile bud 2	5.362
	CRR073305	Juvenile bud 3	6.147
	CRR073306	Third green 1	2.093
	CRR073307	Third green 2	2.032
	CRR073308	Third green 3	2.562
	CRR073309	Second white 1	1.624
	CRR073310	Second white 2	3.248
	CRR073311	Second white 3	2.832
	CRR073312	Silver flowering 1	2.754
	CRR073313	Silver flowering 2	3.297
	CRR073314	Silver flowering 3	3.304
	CRR073315	Gold flowering 1	5.277
	CRR073316	Gold flowering 2	7.735
	CRR073317	Gold flowering 3	5.240
	CRR073318	Tawny withering 1	7.225
	CRR073319	Tawny withering 2	6.002
	CRR073320	Tawny withering 3	5.259