Detail information of GWHGAAZE021693


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006419873.19.44984E-96hypothetical protein CICLE_v10006162mg [Citrus clementina]
COGYP_004004449.16E-3530S ribosomal protein S9
Swissprottr|O22647|RS16_FRIAG2E-9440S ribosomal protein S16
trEMBLtr|A0A067GH45|A0A067GH45_CITSI4E-96Uncharacterized protein {ECO:0000313|EMBL:KDO74722.1}
TAIR10AT5G18380.12E-72Ribosomal protein S5 domain 2-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5972447759724920-
GWHAAZE00000006mRNA5972447759724920-
GWHAAZE00000006exon5972447759724920-
GWHAAZE00000006CDS5972447759724920-
Transcript Sequence

Network for GWHGAAZE021693

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00380.20Ribosomal_S9151471.30E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02960RP-S16e, RPS16 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf288.792
SRR3591706second leaf80.683
SRR3591707mature leaf48.847
SRR3591708Shoot apex361.849
SRR3591709Stem149.035
SRR3591710White floral bud148.918
SRR3591711White flower189.146
SRR3591712Green floral bud235.503
SRR3591713Yellow flower109.809
SRP173429 SRR8316895Juvenile bud stage 175.383
SRR8316896Juvenile bud stage 236.827
SRR8316897Juvenile bud stage 121.336
SRR8316894Third green stage 85.325
SRR8316900Third green stage 326.086
SRR8316901Third green stage 303.187
SRR8316898Complete white stage 94.316
SRR8316899Complete white stage 275.979
SRR8316903Complete white stage 117.666
SRR8316902Silver flowering stage137.721
SRR8316904Silver flowering stage115.200
SRR8316905Silver flowering stage64.560
SRR8316906Gold flowering stage 173.784
SRR8316907Gold flowering stage 238.158
SRR8316908Gold flowering stage 221.977
SRP132670SRR6706286Control293.587
SRR6706287Light intensity 50%314.407
SRR6706288Light intensity 20%333.715
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1335.535
CNS0095593Slightly white alabastrum(diploid) 2423.116
CNS0095594Slightly white alabastrum(diploid) 3293.147
CNS0095595Whole white alabastrum(diploid) 2319.929
CNS0095596Whole white alabastrum(diploid) 3393.423
CNS0095597Whole white alabastrum(diploid) 4265.117
CNS0095598Silvery flower (diploied) 1219.397
CNS0095599Silvery flower (diploied) 2202.510
CNS0095600Silvery flower (diploied) 3212.429
CNS0095601Golden flower (diploid) 1160.493
CNS0095602Golden flower (diploid) 2154.722
CNS0095603Golden flower (diploid) 3146.059
CNS0095604Slightly white alabastrum(tetraploid) 1318.419
CNS0095605Slightly white alabastrum(tetraploid) 2349.605
CNS0095606Slightly white alabastrum(tetraploid) 3367.451
CNS0095607Whole white alabastrum(tetraploid) 1223.537
CNS0095608Whole white alabastrum(tetraploid) 2219.340
CNS0095609Whole white alabastrum(tetraploid) 3286.079
CNS0095610Silvery flower (tetraploid) 1216.560
CNS0095611Silvery flower (tetraploid) 2222.749
CNS0095612Silvery flower (tetraploid) 3274.780
CNS0095613Golden flower (tetraploid) 1174.374
CNS0095614Golden flower (tetraploid) 2166.223
CNS0095615Golden flower (tetraploid) 3155.842
CRA001975CRR073297Stem 1265.353
CRR073298Stem 2297.322
CRR073299Stem 3356.476
CRR073300Leaf 1278.701
CRR073301Leaf 2334.511
CRR073302Leaf 3388.897
CRR073303Juvenile bud 1388.473
CRR073304Juvenile bud 2289.403
CRR073305Juvenile bud 3327.424
CRR073306Third green 1268.849
CRR073307Third green 2311.744
CRR073308Third green 3277.862
CRR073309Second white 1378.345
CRR073310Second white 2224.814
CRR073311Second white 3149.711
CRR073312Silver flowering 1155.599
CRR073313Silver flowering 2239.687
CRR073314Silver flowering 3129.277
CRR073315Gold flowering 1105.466
CRR073316Gold flowering 2120.890
CRR073317Gold flowering 3136.182
CRR073318Tawny withering 1372.556
CRR073319Tawny withering 2293.665
CRR073320Tawny withering 3371.917