Detail information of GWHGAAZE021696


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281388.10PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Vitis vinifera]
COGYP_007053317.10.0000008HEAT repeat-containing protein
Swissprottr|B9DHT4|ARIA_ARATH0ARM REPEAT PROTEIN INTERACTING WITH ABF2
trEMBLtr|F6HDN2|F6HDN2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB50403.1}
TAIR10AT5G19330.10ARM repeat protein interacting with ABF2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5973814559749111-
GWHAAZE00000006mRNA5973814559749111-
GWHAAZE00000006exon5974886259749111-
GWHAAZE00000006exon5974805559748212-
GWHAAZE00000006exon5974489259745064-
GWHAAZE00000006exon5974447759744597-
GWHAAZE00000006exon5974431959744393-
GWHAAZE00000006exon5974409559744189-
GWHAAZE00000006exon5974389259743967-
GWHAAZE00000006exon5974327259743379-
GWHAAZE00000006exon5974245659742584-
GWHAAZE00000006exon5974227959742347-
GWHAAZE00000006exon5974186559741924-
GWHAAZE00000006exon5974166259741716-
GWHAAZE00000006exon5974085059740989-
GWHAAZE00000006exon5974006759740130-
GWHAAZE00000006exon5973983459739913-
GWHAAZE00000006exon5973927159739335-
GWHAAZE00000006exon5973906659739183-
GWHAAZE00000006exon5973814559738330-
GWHAAZE00000006CDS5974886259749111-
GWHAAZE00000006CDS5974805559748212-
GWHAAZE00000006CDS5974489259745064-
GWHAAZE00000006CDS5974447759744597-
GWHAAZE00000006CDS5974431959744393-
GWHAAZE00000006CDS5974409559744189-
GWHAAZE00000006CDS5974389259743967-
GWHAAZE00000006CDS5974327259743379-
GWHAAZE00000006CDS5974245659742584-
GWHAAZE00000006CDS5974227959742347-
GWHAAZE00000006CDS5974186559741924-
GWHAAZE00000006CDS5974166259741716-
GWHAAZE00000006CDS5974085059740989-
GWHAAZE00000006CDS5974006759740130-
GWHAAZE00000006CDS5973983459739913-
GWHAAZE00000006CDS5973927159739335-
GWHAAZE00000006CDS5973906659739183-
GWHAAZE00000006CDS5973814559738330-
Transcript Sequence

Network for GWHGAAZE021696

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00514.24Arm1371830.00018
PF00514.24Arm1972257.30E-07
PF00514.24Arm2282671.00E-07
PF00514.24Arm3123510.00013
PF00651.32BTB5106121.30E-25
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTRAF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf51.154
SRR3591706second leaf28.593
SRR3591707mature leaf26.411
SRR3591708Shoot apex45.778
SRR3591709Stem48.248
SRR3591710White floral bud34.278
SRR3591711White flower36.124
SRR3591712Green floral bud26.185
SRR3591713Yellow flower33.734
SRP173429 SRR8316895Juvenile bud stage 26.064
SRR8316896Juvenile bud stage 33.308
SRR8316897Juvenile bud stage 22.628
SRR8316894Third green stage 14.110
SRR8316900Third green stage 31.462
SRR8316901Third green stage 30.138
SRR8316898Complete white stage 13.564
SRR8316899Complete white stage 38.528
SRR8316903Complete white stage 24.114
SRR8316902Silver flowering stage10.979
SRR8316904Silver flowering stage19.813
SRR8316905Silver flowering stage8.058
SRR8316906Gold flowering stage 27.046
SRR8316907Gold flowering stage 24.701
SRR8316908Gold flowering stage 32.609
SRP132670SRR6706286Control26.031
SRR6706287Light intensity 50%26.964
SRR6706288Light intensity 20%28.368
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.547
CNS0095593Slightly white alabastrum(diploid) 217.428
CNS0095594Slightly white alabastrum(diploid) 316.728
CNS0095595Whole white alabastrum(diploid) 217.244
CNS0095596Whole white alabastrum(diploid) 315.016
CNS0095597Whole white alabastrum(diploid) 418.102
CNS0095598Silvery flower (diploied) 129.664
CNS0095599Silvery flower (diploied) 227.067
CNS0095600Silvery flower (diploied) 327.669
CNS0095601Golden flower (diploid) 129.914
CNS0095602Golden flower (diploid) 232.531
CNS0095603Golden flower (diploid) 329.740
CNS0095604Slightly white alabastrum(tetraploid) 130.408
CNS0095605Slightly white alabastrum(tetraploid) 223.963
CNS0095606Slightly white alabastrum(tetraploid) 349.661
CNS0095607Whole white alabastrum(tetraploid) 120.365
CNS0095608Whole white alabastrum(tetraploid) 217.350
CNS0095609Whole white alabastrum(tetraploid) 330.421
CNS0095610Silvery flower (tetraploid) 141.466
CNS0095611Silvery flower (tetraploid) 233.113
CNS0095612Silvery flower (tetraploid) 336.453
CNS0095613Golden flower (tetraploid) 123.591
CNS0095614Golden flower (tetraploid) 230.540
CNS0095615Golden flower (tetraploid) 331.470
CRA001975CRR073297Stem 131.803
CRR073298Stem 229.058
CRR073299Stem 325.619
CRR073300Leaf 129.544
CRR073301Leaf 226.396
CRR073302Leaf 319.087
CRR073303Juvenile bud 118.345
CRR073304Juvenile bud 213.453
CRR073305Juvenile bud 321.605
CRR073306Third green 111.414
CRR073307Third green 211.177
CRR073308Third green 311.467
CRR073309Second white 114.028
CRR073310Second white 216.401
CRR073311Second white 315.140
CRR073312Silver flowering 113.030
CRR073313Silver flowering 213.026
CRR073314Silver flowering 311.439
CRR073315Gold flowering 111.521
CRR073316Gold flowering 213.916
CRR073317Gold flowering 310.241
CRR073318Tawny withering 120.516
CRR073319Tawny withering 215.673
CRR073320Tawny withering 319.043