Detail information of GWHGAAZE021702


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277936.10PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal [Vitis vinifera]
COGYP_005846047.13E-87Long-chain acyl-CoA synthetase
Swissprottr|Q8LKS5|LACS7_ARATH0Long chain acyl-CoA synthetase 7, peroxisomal
trEMBLtr|D7T6V1|D7T6V1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI26222.3}
TAIR10AT5G27600.10long-chain acyl-CoA synthetase 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5984795559865625+
GWHAAZE00000006mRNA5984795559865625+
GWHAAZE00000006exon5984795559847991+
GWHAAZE00000006exon5984808759848161+
GWHAAZE00000006exon5985667459856734+
GWHAAZE00000006exon5985681859856895+
GWHAAZE00000006exon5985703159857102+
GWHAAZE00000006exon5985803359858106+
GWHAAZE00000006exon5985820059858276+
GWHAAZE00000006exon5985876459858808+
GWHAAZE00000006exon5985893959859025+
GWHAAZE00000006exon5985966259859751+
GWHAAZE00000006exon5985989459859973+
GWHAAZE00000006exon5986009159860184+
GWHAAZE00000006exon5986130259861390+
GWHAAZE00000006exon5986149759861585+
GWHAAZE00000006exon5986214859862277+
GWHAAZE00000006exon5986238559862503+
GWHAAZE00000006exon5986284659862969+
GWHAAZE00000006exon5986311459863200+
GWHAAZE00000006exon5986399659864099+
GWHAAZE00000006exon5986418959864274+
GWHAAZE00000006exon5986495059865036+
GWHAAZE00000006exon5986551259865625+
GWHAAZE00000006CDS5984795559847991+
GWHAAZE00000006CDS5984808759848161+
GWHAAZE00000006CDS5985667459856734+
GWHAAZE00000006CDS5985681859856895+
GWHAAZE00000006CDS5985703159857102+
GWHAAZE00000006CDS5985803359858106+
GWHAAZE00000006CDS5985820059858276+
GWHAAZE00000006CDS5985876459858808+
GWHAAZE00000006CDS5985893959859025+
GWHAAZE00000006CDS5985966259859751+
GWHAAZE00000006CDS5985989459859973+
GWHAAZE00000006CDS5986009159860184+
GWHAAZE00000006CDS5986130259861390+
GWHAAZE00000006CDS5986149759861585+
GWHAAZE00000006CDS5986214859862277+
GWHAAZE00000006CDS5986238559862503+
GWHAAZE00000006CDS5986284659862969+
GWHAAZE00000006CDS5986311459863200+
GWHAAZE00000006CDS5986399659864099+
GWHAAZE00000006CDS5986418959864274+
GWHAAZE00000006CDS5986495059865036+
GWHAAZE00000006CDS5986551259865610+
GWHAAZE00000006three_prime_UTR5986561159865625+
Transcript Sequence

Network for GWHGAAZE021702

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding1095106.60E-92
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01897ACSL, fadD Metabolic pathways map01100
Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Ferroptosismap04216
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.000
SRR3591706second leaf17.801
SRR3591707mature leaf26.234
SRR3591708Shoot apex23.664
SRR3591709Stem46.731
SRR3591710White floral bud51.849
SRR3591711White flower65.485
SRR3591712Green floral bud21.983
SRR3591713Yellow flower120.791
SRP173429 SRR8316895Juvenile bud stage 17.188
SRR8316896Juvenile bud stage 24.846
SRR8316897Juvenile bud stage 11.601
SRR8316894Third green stage 8.214
SRR8316900Third green stage 25.303
SRR8316901Third green stage 23.004
SRR8316898Complete white stage 17.592
SRR8316899Complete white stage 29.500
SRR8316903Complete white stage 28.416
SRR8316902Silver flowering stage23.446
SRR8316904Silver flowering stage32.870
SRR8316905Silver flowering stage18.051
SRR8316906Gold flowering stage 85.076
SRR8316907Gold flowering stage 76.014
SRR8316908Gold flowering stage 121.664
SRP132670SRR6706286Control20.411
SRR6706287Light intensity 50%20.362
SRR6706288Light intensity 20%22.142
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.775
CNS0095593Slightly white alabastrum(diploid) 222.882
CNS0095594Slightly white alabastrum(diploid) 318.944
CNS0095595Whole white alabastrum(diploid) 216.317
CNS0095596Whole white alabastrum(diploid) 316.182
CNS0095597Whole white alabastrum(diploid) 415.503
CNS0095598Silvery flower (diploied) 129.111
CNS0095599Silvery flower (diploied) 224.258
CNS0095600Silvery flower (diploied) 350.708
CNS0095601Golden flower (diploid) 128.524
CNS0095602Golden flower (diploid) 257.715
CNS0095603Golden flower (diploid) 357.193
CNS0095604Slightly white alabastrum(tetraploid) 114.068
CNS0095605Slightly white alabastrum(tetraploid) 212.936
CNS0095606Slightly white alabastrum(tetraploid) 320.932
CNS0095607Whole white alabastrum(tetraploid) 110.477
CNS0095608Whole white alabastrum(tetraploid) 29.616
CNS0095609Whole white alabastrum(tetraploid) 319.628
CNS0095610Silvery flower (tetraploid) 180.841
CNS0095611Silvery flower (tetraploid) 262.714
CNS0095612Silvery flower (tetraploid) 383.338
CNS0095613Golden flower (tetraploid) 195.591
CNS0095614Golden flower (tetraploid) 2107.520
CNS0095615Golden flower (tetraploid) 3104.356
CRA001975CRR073297Stem 120.996
CRR073298Stem 219.561
CRR073299Stem 314.890
CRR073300Leaf 125.220
CRR073301Leaf 223.784
CRR073302Leaf 317.763
CRR073303Juvenile bud 120.220
CRR073304Juvenile bud 217.439
CRR073305Juvenile bud 322.009
CRR073306Third green 128.664
CRR073307Third green 220.345
CRR073308Third green 325.359
CRR073309Second white 175.561
CRR073310Second white 283.822
CRR073311Second white 3122.223
CRR073312Silver flowering 1145.341
CRR073313Silver flowering 296.533
CRR073314Silver flowering 3129.260
CRR073315Gold flowering 112.163
CRR073316Gold flowering 220.176
CRR073317Gold flowering 311.793
CRR073318Tawny withering 113.131
CRR073319Tawny withering 216.227
CRR073320Tawny withering 38.797