Detail information of GWHGAAZE021709


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011071573.12.0791E-178PREDICTED: vacuole membrane protein KMS1-like [Sesamum indicum]
COGYP_004174596.10.00000009hypothetical protein ANT_19700
Swissprottr|Q5XF36|KMS1_ARATH4E-172Vacuole membrane protein KMS1 {ECO:0000303|PubMed:21294794}
trEMBLtr|B9RSQ1|B9RSQ1_RICCO2E-178Vacuole membrane protein, putative {ECO:0000313|EMBL:EEF45384.1}
TAIR10AT4G14950.33E-140SNARE associated Golgi protein family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5996342159973375-
GWHAAZE00000006mRNA5996342159973375-
GWHAAZE00000006exon5997331859973375-
GWHAAZE00000006exon5997080559971013-
GWHAAZE00000006exon5996944959969527-
GWHAAZE00000006exon5996921259969270-
GWHAAZE00000006exon5996891959969021-
GWHAAZE00000006exon5996687959967036-
GWHAAZE00000006exon5996659759966713-
GWHAAZE00000006exon5996549059965669-
GWHAAZE00000006exon5996342159963621-
GWHAAZE00000006CDS5997331859973375-
GWHAAZE00000006CDS5997080559971013-
GWHAAZE00000006CDS5996944959969527-
GWHAAZE00000006CDS5996921259969270-
GWHAAZE00000006CDS5996891959969021-
GWHAAZE00000006CDS5996687959967036-
GWHAAZE00000006CDS5996659759966713-
GWHAAZE00000006CDS5996549059965669-
GWHAAZE00000006CDS5996342159963621-
Transcript Sequence

Network for GWHGAAZE021709

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K21248VMP1 Autophagy - animal map04140

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.078
SRR3591706second leaf22.703
SRR3591707mature leaf20.176
SRR3591708Shoot apex28.526
SRR3591709Stem46.661
SRR3591710White floral bud48.948
SRR3591711White flower49.947
SRR3591712Green floral bud37.500
SRR3591713Yellow flower75.074
SRP173429 SRR8316895Juvenile bud stage 18.649
SRR8316896Juvenile bud stage 24.174
SRR8316897Juvenile bud stage 18.471
SRR8316894Third green stage 10.918
SRR8316900Third green stage 33.062
SRR8316901Third green stage 36.422
SRR8316898Complete white stage 23.212
SRR8316899Complete white stage 55.584
SRR8316903Complete white stage 32.128
SRR8316902Silver flowering stage22.238
SRR8316904Silver flowering stage29.522
SRR8316905Silver flowering stage12.878
SRR8316906Gold flowering stage 51.056
SRR8316907Gold flowering stage 61.432
SRR8316908Gold flowering stage 41.117
SRP132670SRR6706286Control16.282
SRR6706287Light intensity 50%15.955
SRR6706288Light intensity 20%16.695
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.363
CNS0095593Slightly white alabastrum(diploid) 223.798
CNS0095594Slightly white alabastrum(diploid) 324.120
CNS0095595Whole white alabastrum(diploid) 223.394
CNS0095596Whole white alabastrum(diploid) 325.138
CNS0095597Whole white alabastrum(diploid) 422.774
CNS0095598Silvery flower (diploied) 115.521
CNS0095599Silvery flower (diploied) 214.777
CNS0095600Silvery flower (diploied) 343.962
CNS0095601Golden flower (diploid) 116.245
CNS0095602Golden flower (diploid) 241.536
CNS0095603Golden flower (diploid) 342.449
CNS0095604Slightly white alabastrum(tetraploid) 126.545
CNS0095605Slightly white alabastrum(tetraploid) 225.385
CNS0095606Slightly white alabastrum(tetraploid) 332.098
CNS0095607Whole white alabastrum(tetraploid) 124.874
CNS0095608Whole white alabastrum(tetraploid) 223.841
CNS0095609Whole white alabastrum(tetraploid) 332.859
CNS0095610Silvery flower (tetraploid) 134.211
CNS0095611Silvery flower (tetraploid) 226.923
CNS0095612Silvery flower (tetraploid) 339.064
CNS0095613Golden flower (tetraploid) 121.200
CNS0095614Golden flower (tetraploid) 228.699
CNS0095615Golden flower (tetraploid) 334.218
CRA001975CRR073297Stem 123.860
CRR073298Stem 225.347
CRR073299Stem 324.900
CRR073300Leaf 131.861
CRR073301Leaf 225.677
CRR073302Leaf 326.632
CRR073303Juvenile bud 128.861
CRR073304Juvenile bud 232.949
CRR073305Juvenile bud 324.543
CRR073306Third green 131.256
CRR073307Third green 228.767
CRR073308Third green 335.142
CRR073309Second white 130.489
CRR073310Second white 246.116
CRR073311Second white 341.631
CRR073312Silver flowering 139.094
CRR073313Silver flowering 230.818
CRR073314Silver flowering 342.757
CRR073315Gold flowering 113.680
CRR073316Gold flowering 219.505
CRR073317Gold flowering 315.089
CRR073318Tawny withering 134.136
CRR073319Tawny withering 240.044
CRR073320Tawny withering 339.869