Detail information of GWHGAAZE021711


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001275788.13.5936E-114PSI reaction center subunit II [Citrus sinensis]
Swissprottr|P29302|PSAD_NICSY1E-109Photosystem I reaction center subunit II, chloroplastic (Precursor)
trEMBLtr|A8C1B5|A8C1B5_CITSI1E-114PSI reaction center subunit II {ECO:0000313|EMBL:BAF80479.1} (Precursor)
TAIR10AT1G03130.11E-84photosystem I subunit D-2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6003841160039013-
GWHAAZE00000006mRNA6003841160039013-
GWHAAZE00000006exon6003841160039013-
GWHAAZE00000006CDS6003841160039013-
Transcript Sequence

Network for GWHGAAZE021711

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02531.17PsaD671981.50E-68
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02692psaD Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0015979biological_processphotosynthesis
GO:0009522cellular_componentphotosystem I
GO:0009538cellular_componentphotosystem I reaction center

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf542.716
SRR3591706second leaf3065.477
SRR3591707mature leaf2720.712
SRR3591708Shoot apex1047.305
SRR3591709Stem460.185
SRR3591710White floral bud158.483
SRR3591711White flower172.326
SRR3591712Green floral bud88.056
SRR3591713Yellow flower122.166
SRP173429 SRR8316895Juvenile bud stage 314.247
SRR8316896Juvenile bud stage 262.708
SRR8316897Juvenile bud stage 181.654
SRR8316894Third green stage 85.482
SRR8316900Third green stage 179.726
SRR8316901Third green stage 179.030
SRR8316898Complete white stage 113.364
SRR8316899Complete white stage 150.023
SRR8316903Complete white stage 196.056
SRR8316902Silver flowering stage120.397
SRR8316904Silver flowering stage105.887
SRR8316905Silver flowering stage95.901
SRR8316906Gold flowering stage 220.014
SRR8316907Gold flowering stage 238.990
SRR8316908Gold flowering stage 149.998
SRP132670SRR6706286Control303.684
SRR6706287Light intensity 50%247.436
SRR6706288Light intensity 20%220.066
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1237.404
CNS0095593Slightly white alabastrum(diploid) 2130.582
CNS0095594Slightly white alabastrum(diploid) 3178.428
CNS0095595Whole white alabastrum(diploid) 2118.057
CNS0095596Whole white alabastrum(diploid) 3106.963
CNS0095597Whole white alabastrum(diploid) 488.118
CNS0095598Silvery flower (diploied) 1393.217
CNS0095599Silvery flower (diploied) 2372.458
CNS0095600Silvery flower (diploied) 3328.683
CNS0095601Golden flower (diploid) 1430.436
CNS0095602Golden flower (diploid) 2472.583
CNS0095603Golden flower (diploid) 3473.496
CNS0095604Slightly white alabastrum(tetraploid) 1200.099
CNS0095605Slightly white alabastrum(tetraploid) 2235.511
CNS0095606Slightly white alabastrum(tetraploid) 3256.631
CNS0095607Whole white alabastrum(tetraploid) 1109.312
CNS0095608Whole white alabastrum(tetraploid) 286.824
CNS0095609Whole white alabastrum(tetraploid) 3148.010
CNS0095610Silvery flower (tetraploid) 1295.864
CNS0095611Silvery flower (tetraploid) 2479.672
CNS0095612Silvery flower (tetraploid) 3259.460
CNS0095613Golden flower (tetraploid) 1253.332
CNS0095614Golden flower (tetraploid) 2318.030
CNS0095615Golden flower (tetraploid) 3328.180
CRA001975CRR073297Stem 1222.232
CRR073298Stem 2205.619
CRR073299Stem 3348.743
CRR073300Leaf 143.592
CRR073301Leaf 260.145
CRR073302Leaf 357.646
CRR073303Juvenile bud 138.262
CRR073304Juvenile bud 253.853
CRR073305Juvenile bud 365.995
CRR073306Third green 1130.500
CRR073307Third green 2102.142
CRR073308Third green 3103.901
CRR073309Second white 1219.515
CRR073310Second white 2115.300
CRR073311Second white 3111.791
CRR073312Silver flowering 1187.185
CRR073313Silver flowering 2217.827
CRR073314Silver flowering 3143.991
CRR073315Gold flowering 14341.584
CRR073316Gold flowering 23636.216
CRR073317Gold flowering 34560.332
CRR073318Tawny withering 1250.410
CRR073319Tawny withering 2297.305
CRR073320Tawny withering 3222.595