Detail information of GWHGAAZE021712


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO99042.11.3033E-140unnamed protein product [Coffea canephora]
COGYP_004457998.12E-53spermine synthase
Swissprottr|Q9S7X6|ACL5_ARATH3E-106Thermospermine synthase ACAULIS5
trEMBLtr|A0A068TSL7|A0A068TSL7_COFCA5E-141Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313|EMBL:CDO99042.1}
TAIR10AT5G19530.14E-80S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6004135760046344-
GWHAAZE00000006mRNA6004135760046344-
GWHAAZE00000006exon6004135760041438-
GWHAAZE00000006exon6004199860042134-
GWHAAZE00000006exon6004279560042853-
GWHAAZE00000006exon6004295660043031-
GWHAAZE00000006exon6004377760043936-
GWHAAZE00000006exon6004513660045224-
GWHAAZE00000006exon6004626160046344-
GWHAAZE00000006CDS6004626160046344-
GWHAAZE00000006CDS6004513660045224-
GWHAAZE00000006CDS6004377760043936-
GWHAAZE00000006CDS6004295660043031-
GWHAAZE00000006CDS6004279560042853-
GWHAAZE00000006CDS6004199860042134-
GWHAAZE00000006CDS6004135760041438-
Transcript Sequence

Network for GWHGAAZE021712

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0300


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01564.18Spermine_synth21582.10E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.135
SRR3591706second leaf0.545
SRR3591707mature leaf0.000
SRR3591708Shoot apex4.292
SRR3591709Stem4.698
SRR3591710White floral bud0.271
SRR3591711White flower1.732
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.043
SRP173429 SRR8316895Juvenile bud stage 0.463
SRR8316896Juvenile bud stage 0.234
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.098
SRR8316900Third green stage 0.114
SRR8316901Third green stage 0.066
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.141
SRR8316902Silver flowering stage4.644
SRR8316904Silver flowering stage0.834
SRR8316905Silver flowering stage0.358
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 1.024
SRR8316908Gold flowering stage 0.125
SRP132670SRR6706286Control0.037
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.255
CNS0095593Slightly white alabastrum(diploid) 20.187
CNS0095594Slightly white alabastrum(diploid) 30.144
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.045
CNS0095597Whole white alabastrum(diploid) 40.083
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.386
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.065
CNS0095605Slightly white alabastrum(tetraploid) 20.003
CNS0095606Slightly white alabastrum(tetraploid) 30.646
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.052
CNS0095609Whole white alabastrum(tetraploid) 30.520
CNS0095610Silvery flower (tetraploid) 125.628
CNS0095611Silvery flower (tetraploid) 20.744
CNS0095612Silvery flower (tetraploid) 30.442
CNS0095613Golden flower (tetraploid) 10.182
CNS0095614Golden flower (tetraploid) 20.074
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.096
CRR073298Stem 20.066
CRR073299Stem 30.122
CRR073300Leaf 10.000
CRR073301Leaf 20.000
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.006
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.398
CRR073316Gold flowering 20.016
CRR073317Gold flowering 30.229
CRR073318Tawny withering 10.772
CRR073319Tawny withering 20.154
CRR073320Tawny withering 30.131