Gene detail

Detail information of GWHGAAZE021756

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010024285.1	0	PREDICTED: cysteine synthase [Eucalyptus grandis]
COG	YP_591171.1	6E-132	cysteine synthase
Swissprot	tr\|O81154\|CYSK_SOLTU	0	Cysteine synthase
trEMBL	tr\|A0A059B3Y0\|A0A059B3Y0_EUCGR	0	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT4G14880.4	2E-141	O-acetylserine (thiol) lyase (OAS-TL) isoform A1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	60825111	60829256	-
GWHAAZE00000006	mRNA	60825111	60829256	-
GWHAAZE00000006	exon	60829108	60829256	-
GWHAAZE00000006	exon	60828721	60828883	-
GWHAAZE00000006	exon	60828392	60828501	-
GWHAAZE00000006	exon	60828194	60828251	-
GWHAAZE00000006	exon	60827337	60827600	-
GWHAAZE00000006	exon	60826660	60826797	-
GWHAAZE00000006	exon	60826130	60826181	-
GWHAAZE00000006	exon	60825955	60826034	-
GWHAAZE00000006	exon	60825810	60825869	-
GWHAAZE00000006	exon	60825511	60825591	-
GWHAAZE00000006	exon	60825111	60825203	-
GWHAAZE00000006	five_prime_UTR	60829108	60829256	-
GWHAAZE00000006	five_prime_UTR	60828754	60828883	-
GWHAAZE00000006	CDS	60828721	60828753	-
GWHAAZE00000006	CDS	60828392	60828501	-
GWHAAZE00000006	CDS	60828194	60828251	-
GWHAAZE00000006	CDS	60827337	60827600	-
GWHAAZE00000006	CDS	60826660	60826797	-
GWHAAZE00000006	CDS	60826130	60826181	-
GWHAAZE00000006	CDS	60825955	60826034	-
GWHAAZE00000006	CDS	60825810	60825869	-
GWHAAZE00000006	CDS	60825511	60825591	-
GWHAAZE00000006	CDS	60825111	60825203	-

Transcript Sequence
>GWHTAAZE021780 TATTTTTTTAGGATAATGTTTAAAAAATTGGGTGACGCTAACGATGTTGCCGGTCAGAATTTAGATTTCGTAATGTAGACTATATGCAGCTGGAAGGTTCATTGATGGATGGTGATCTGTTAACAAGCTCAGTATTATTCCATAATAATAAATTCCATTTTTAGGGTTTTTAGCATCTAATCTCTCTAATTTTATTGTACCTTTTATCACAGTATCTAAATTAGATTGACTGAACAACTTGTTTGTTTCTCGGTTGATTGCAGCGATTAATCAAAGAGTATGGCGTCTGGAATTGCTAAGAATGTTACTGAATTGATTGGTAACACCCCACTGGTGTATCTCAACCATGTGGTAGACGGTTGTTTTGCCCGCATTGCAGCCAAGCTAGAGACGATGGAGCCCTGCTCTAGTGTCAAAGACAGGATTGCTTATAGTATGATTGCGGATGCTGAGGAAAAGGGCCTTATCAAACCAGGGGAGAGTGTCCTCATTGAACCTACAAGTGGTAACACGGGCATAGGATTGGCCTTCCTGGCGGCAGCTAAGGGGTACAAGCTTGTCATCACCATGCCGGCTTCGATGAGTCTTGAGAGAAGAATCATTCTCCTTGCATTTGGTGTTGAGTTGGTGATCACAGATCCAGCTAAGGGCATGAAAGGTGCTATTCAGAAAGCCGAAGAGATAGCAGCTAAAACACCCAATTCTTACATCCTTCAACAGTTTCAAAACCCTGCTAACCCCAAGATACATTATGAAACTACTGGACCCGAGATATGGAAAGGCACAAATGGGAAAGTTGACGCCTTTGTTTCTGGAATTGGCACCGGGGGTACAATTACTGGTGCTGGAAAGTTCCTTAAAGAGCAGAACCCTAAGATAAAGCTGTATGGTATAGAGCCCACTGAAAGCCCTGTTCTATCTGGCGGACCACCTGGTCCACACAAGATCCAAGGAATTGGTGCTGGTTTTATTCCTGGAGTTTTGGAAGTTAAAATCGTTGATGAAGTTATCCAGATCTCAAGCGAAGAAGCCATTGAAACTGCTAAGCTTCTTGCTCTTAAAGAAGGACTACTGGTGGGAATATCATCAGGTGCAGCAGCCGCTGCTGCAATTAAGATTGCAAAGAGGGAAGAAAATGCCGGAAAACTGATTGTTGCAATATTTCCGAGCTTTGGGGAACGGTATCTATCTTCTGTGCTGTTCGAATCAGTGAGACGTGAGGCCGAGACCATGACTTTCGAGACCTAA

Network for GWHGAAZE021756

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	10	296	6.50E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01738	cysK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0004124	molecular_function	cysteine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	109.723
	SRR3591706	second leaf	155.326
	SRR3591707	mature leaf	171.674
	SRR3591708	Shoot apex	61.610
	SRR3591709	Stem	193.803
	SRR3591710	White floral bud	79.779
	SRR3591711	White flower	90.046
	SRR3591712	Green floral bud	52.656
	SRR3591713	Yellow flower	123.155
SRP173429	SRR8316895	Juvenile bud stage	44.726
	SRR8316896	Juvenile bud stage	58.582
	SRR8316897	Juvenile bud stage	38.756
	SRR8316894	Third green stage	24.907
	SRR8316900	Third green stage	82.318
	SRR8316901	Third green stage	72.306
	SRR8316898	Complete white stage	37.766
	SRR8316899	Complete white stage	57.222
	SRR8316903	Complete white stage	49.207
	SRR8316902	Silver flowering stage	26.432
	SRR8316904	Silver flowering stage	43.245
	SRR8316905	Silver flowering stage	23.118
	SRR8316906	Gold flowering stage	58.419
	SRR8316907	Gold flowering stage	69.628
	SRR8316908	Gold flowering stage	76.936
SRP132670	SRR6706286	Control	95.715
	SRR6706287	Light intensity 50%	86.264
	SRR6706288	Light intensity 20%	86.716
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.931
	CNS0095593	Slightly white alabastrum(diploid) 2	44.361
	CNS0095594	Slightly white alabastrum(diploid) 3	47.757
	CNS0095595	Whole white alabastrum(diploid) 2	48.398
	CNS0095596	Whole white alabastrum(diploid) 3	55.572
	CNS0095597	Whole white alabastrum(diploid) 4	43.854
	CNS0095598	Silvery flower (diploied) 1	78.013
	CNS0095599	Silvery flower (diploied) 2	78.854
	CNS0095600	Silvery flower (diploied) 3	105.385
	CNS0095601	Golden flower (diploid) 1	63.243
	CNS0095602	Golden flower (diploid) 2	103.009
	CNS0095603	Golden flower (diploid) 3	98.297
	CNS0095604	Slightly white alabastrum(tetraploid) 1	68.968
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.329
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.880
	CNS0095607	Whole white alabastrum(tetraploid) 1	48.389
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.576
	CNS0095609	Whole white alabastrum(tetraploid) 3	65.185
	CNS0095610	Silvery flower (tetraploid) 1	78.359
	CNS0095611	Silvery flower (tetraploid) 2	98.026
	CNS0095612	Silvery flower (tetraploid) 3	122.885
	CNS0095613	Golden flower (tetraploid) 1	53.121
	CNS0095614	Golden flower (tetraploid) 2	67.776
	CNS0095615	Golden flower (tetraploid) 3	90.983
CRA001975	CRR073297	Stem 1	94.922
	CRR073298	Stem 2	86.362
	CRR073299	Stem 3	99.125
	CRR073300	Leaf 1	66.394
	CRR073301	Leaf 2	82.501
	CRR073302	Leaf 3	81.882
	CRR073303	Juvenile bud 1	76.696
	CRR073304	Juvenile bud 2	78.682
	CRR073305	Juvenile bud 3	75.781
	CRR073306	Third green 1	81.875
	CRR073307	Third green 2	72.613
	CRR073308	Third green 3	71.072
	CRR073309	Second white 1	93.425
	CRR073310	Second white 2	64.451
	CRR073311	Second white 3	61.338
	CRR073312	Silver flowering 1	56.380
	CRR073313	Silver flowering 2	44.844
	CRR073314	Silver flowering 3	43.129
	CRR073315	Gold flowering 1	223.014
	CRR073316	Gold flowering 2	243.445
	CRR073317	Gold flowering 3	219.881
	CRR073318	Tawny withering 1	152.928
	CRR073319	Tawny withering 2	130.625
	CRR073320	Tawny withering 3	141.869