Gene detail

Detail information of GWHGAAZE021760

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649898.1	0	PREDICTED: uncharacterized protein LOC100247619 isoform X2 [Vitis vinifera]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	0.000000004	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|F6HDQ0\|F6HDQ0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50421.1}
TAIR10	AT4G14920.1	0	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	60861152	60867397	-
GWHAAZE00000006	mRNA	60861152	60867397	-
GWHAAZE00000006	exon	60861152	60861379	-
GWHAAZE00000006	exon	60861745	60861844	-
GWHAAZE00000006	exon	60862264	60862350	-
GWHAAZE00000006	exon	60862533	60862771	-
GWHAAZE00000006	exon	60863814	60863899	-
GWHAAZE00000006	exon	60864479	60864611	-
GWHAAZE00000006	exon	60865331	60867397	-
GWHAAZE00000006	CDS	60865331	60867397	-
GWHAAZE00000006	CDS	60864479	60864611	-
GWHAAZE00000006	CDS	60863814	60863899	-
GWHAAZE00000006	CDS	60862533	60862771	-
GWHAAZE00000006	CDS	60862264	60862350	-
GWHAAZE00000006	CDS	60861745	60861844	-
GWHAAZE00000006	CDS	60861152	60861379	-

Transcript Sequence
>GWHTAAZE021784 ATGCATGATATGGAGGAGGGTGTGAGATACGCTGCTCCTTCAGGGGGTGTGATAAAGAAGAAGAGCTCTTCTGGTTGTTTGATTATAAAAAAGAAAGGGGATGGAATTGGGGGAATTGGTGATTCGATTTCGAAGAAGGTTTTTGACTCCAGGAAGGAGAAGAAGAGACCTCGATTGGTTCTCAGCGATTCGGAGTCTAGTGGTAAGCTATTAGAGCCTATTCGGAGCAAATTTGTGTGTGAAAATGATGAATTTCGAAATGGTTCGGTTAGTTATAGGAAGGGTTTCGTGGGAGAAGATGGTTTTATAAAGAATGGTCTGGTTGAGAGTGAGAGAAAAAGAAGCGCGATAGAGTTTGATGAGTATGATGGATTCAATGGGAAAAAGATGAGGAAGGATTATGTGGATAATAGGTTGATGCTAGCTGGACCAAGTGGGAGTAGGAGGGAAACAGGAAGTTATATGGTTGACAAGATCAAGCATTCTTATTTCAATGGTACAGGTAGTAATGTGCCTAATTATAAGAACAGACATGAGGTGGACGAGGATGAAACCCATCTACCTGTTACATTATTGAGGGAGATGTATCAGGAAGTGCCCGATGAGCCCATCAGGTTGCAGGGAAAAAATGGCGTGTTGAAAGTAATGGTAAATAAAAACAAACAGTTCAGTTTGTATCATAAAAGTTATGATCACCAGAAAGCTCAAGATAGAAAGGGTTTTAGATCTGAGGAAGCTGTCAAGAATGTAGCTAACCAACCGTCATTTTACTCTGCTTCGAAATGTCCTGAAAAACGTCCTCCTTTTGTGGGAACAGAGAAAAGTGAGCTTAATTCCAAAGGTCATGAAAAACTGGTGCCGTTTGCAAGGACAGATAAAAGTGACCTGAAATTGCCGAAAAAACCGAATAAGAGCAGTAGGGCTGGCAATTCTGAAACAGATGATAGTGAAGCATCACTGAAGCTGAGATCATCGAGTATGCAAGCTTGCAACTCTAGGAAAACAATAAAAAGTGAAGAAAAAGCAACCCCAGCAACTGAAATTGTCACCCCGGTTAAGGGCAAGGAAGCCAAGGTTAAGCGTGGTACTGGCACAGAGAAACAAATATTAAGGGAGAAGATAAGGAGTATGCTTCTCAAGGCTGGGTGGACAATTGATTATAGACCAAGAAGGAACCGAGACTACCTAGATGCGGTGTATGTAAACCCTGCCGGAACGGCTTATTGGTCAATTATTAAGGCCTATGATGCTCTTCAAAAGCAGTTGGAGGAAAAGAATATTGACACTCTTTTACCGGAGGAGACACTCAGTAAATTAACAAGGCAAACCCGTAAGAAGATTGAGAGGGAAATGAATAAGAAGAGAAGAGATGAGGGTGGCAGTAAGAATCCTAAGGATGCTTTGGTAAAAGATACTGAAGGGAAACTTAGTCTCCATAAAAAGCAGAATCATGCAAGCGGAGATGATTTACGAGGTAATTTGGACAAGCAAGGATCAGAGGAAGAGAAAGCTGAGAAGCAATTTAGTAGAACCAATTCTCATTTGGTACAGGGAAGAAAAAGTAGAAAAATCGGTAGGTGTACTTTGTTGGTTCGTACCTCTGACAATGAGCTAAATTCAGAAAATGACGGCTTTGTTCCATATACTGGAAAACGAACACTTTTATATTGGCTGATTGATTCTGGAATAGTTCATATGGGTGAGAAAGTGCAGTATATCAACCGTAAAAAGACCCGAGTAATGCTTGAGGGTTGGATCACAACAGATGGGATCCACTGTCGTTGTTGTAGCAAAATTCTCCCAATTTCGAAGTTTGAGATTCATGCGGGAAGCAAACAGCGGCAGCCTTTTCAGCATGTATTTCTAGAGTCTGGATCTTCACTTGTGCAATGCCTGGTAGACGCATGGAATAGACAAGAAGAGTCAGAACGCCAGAGTTATCACACTGTTGATATCGATGGTGATGATCCAAATGATGATACCTGTGGACTTTGTGCTGACGGTGGTGATTTGATTTGCTGTGACGGTTGTCCATCAACTTTTCATCAGAGTTGCTTGAATATACAGATGCTTCCCCCAGGTGATTGGCACTGTACAAATTGTAGATGCAAATTTTGTGGGATTGGCGGTGGGAGTATAACCGAAGAAAATGGTAGAACTGTTAGTGCACTTCTCATTTGCAGCCATTGTGAGAAAAAATATCATAAATCATGCAGTAAGGAAATGGATGACATACCAGTTGATTCCAAGAATGCAACAACTTTTTGTGGGGCAAGGTGCCGAGAGCTCTTTGGCCATTTACAGAAACTTCTTGGCGTCAAACATGAATTGGAAGCAGGATTCTCTTGGTCTCTCATCCGTCAGATGGATCCATTCTCGGATCTATCACAAGCTGAATTTGCTCAGAGGGTGGAATGCAATTCTAAGCTAGCAGTTGCACTGACTGTTATGGATGAGTGTTTTTTGCCCATTCGTGATAGGAGGAGTGGGATCAATATAATTCACAATGTTCTCTATAATTGTGGGTCAAACTTCAGTCGTTTAAACTACAATGGCTTCTATACAGCTATTCTGGAGAGGGGTGATGAAATAATCTCTGCAGCATCCATCAGGATCCATGGTACCCAACTAGCAGAGATGCCATTTATCGGGACCCGACATATATATAGACGCCAAGGGATGTGCCGTCGCCTATTATCTGCTATTGAATCGGTCCTCTGCTCTTTCAAAGTCGAGAAATTGATGATTCCTGCTATTGCCGAGCACATGCATACATGGACTGAAGTTTTCAACTTCAAGCCGCTTGAGGAAATATACAAACAAGAAATTAGGTCCATCAATATGTTGGTTTTCCCTGGTATAGATGTTTTACAGAAGAAGCTGCTAGTGAAGCAAGAAATTCCAGAGGGAAACAAAACTGCAAATTCAGGTGTTTTTTAA

Network for GWHGAAZE021760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16135.6	TDBD	584	634	8.30E-20
PF00628.30	PHD	662	704	5.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.960
	SRR3591706	second leaf	9.126
	SRR3591707	mature leaf	6.141
	SRR3591708	Shoot apex	9.619
	SRR3591709	Stem	10.811
	SRR3591710	White floral bud	17.242
	SRR3591711	White flower	15.583
	SRR3591712	Green floral bud	10.372
	SRR3591713	Yellow flower	10.397
SRP173429	SRR8316895	Juvenile bud stage	5.151
	SRR8316896	Juvenile bud stage	8.016
	SRR8316897	Juvenile bud stage	3.292
	SRR8316894	Third green stage	4.691
	SRR8316900	Third green stage	9.421
	SRR8316901	Third green stage	9.498
	SRR8316898	Complete white stage	5.535
	SRR8316899	Complete white stage	8.945
	SRR8316903	Complete white stage	12.779
	SRR8316902	Silver flowering stage	8.126
	SRR8316904	Silver flowering stage	11.315
	SRR8316905	Silver flowering stage	4.856
	SRR8316906	Gold flowering stage	12.017
	SRR8316907	Gold flowering stage	14.011
	SRR8316908	Gold flowering stage	12.509
SRP132670	SRR6706286	Control	6.104
	SRR6706287	Light intensity 50%	7.356
	SRR6706288	Light intensity 20%	6.808
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.600
	CNS0095593	Slightly white alabastrum(diploid) 2	3.082
	CNS0095594	Slightly white alabastrum(diploid) 3	3.544
	CNS0095595	Whole white alabastrum(diploid) 2	4.283
	CNS0095596	Whole white alabastrum(diploid) 3	3.202
	CNS0095597	Whole white alabastrum(diploid) 4	3.776
	CNS0095598	Silvery flower (diploied) 1	6.951
	CNS0095599	Silvery flower (diploied) 2	5.246
	CNS0095600	Silvery flower (diploied) 3	12.030
	CNS0095601	Golden flower (diploid) 1	5.039
	CNS0095602	Golden flower (diploid) 2	8.199
	CNS0095603	Golden flower (diploid) 3	7.823
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.377
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.566
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.310
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.463
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.637
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.458
	CNS0095610	Silvery flower (tetraploid) 1	11.308
	CNS0095611	Silvery flower (tetraploid) 2	10.000
	CNS0095612	Silvery flower (tetraploid) 3	16.752
	CNS0095613	Golden flower (tetraploid) 1	4.807
	CNS0095614	Golden flower (tetraploid) 2	8.235
	CNS0095615	Golden flower (tetraploid) 3	9.714
CRA001975	CRR073297	Stem 1	8.217
	CRR073298	Stem 2	7.706
	CRR073299	Stem 3	4.295
	CRR073300	Leaf 1	8.544
	CRR073301	Leaf 2	7.311
	CRR073302	Leaf 3	4.315
	CRR073303	Juvenile bud 1	5.032
	CRR073304	Juvenile bud 2	4.468
	CRR073305	Juvenile bud 3	5.923
	CRR073306	Third green 1	9.838
	CRR073307	Third green 2	5.523
	CRR073308	Third green 3	11.459
	CRR073309	Second white 1	3.625
	CRR073310	Second white 2	9.443
	CRR073311	Second white 3	9.115
	CRR073312	Silver flowering 1	7.060
	CRR073313	Silver flowering 2	4.497
	CRR073314	Silver flowering 3	5.669
	CRR073315	Gold flowering 1	1.330
	CRR073316	Gold flowering 2	3.602
	CRR073317	Gold flowering 3	0.677
	CRR073318	Tawny withering 1	5.584
	CRR073319	Tawny withering 2	6.116
	CRR073320	Tawny withering 3	5.422