Gene detail

Detail information of GWHGAAZE021763

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010256021.1	9.0384E-129	PREDICTED: probable tubulin--tyrosine ligase PBY1 isoform X2 [Nelumbo nucifera]
COG	YP_003156637.1	3E-23	stationary-phase survival protein SurE
trEMBL	tr\|M5XFF3\|M5XFF3_PRUPE	2E-125	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24191.1}
TAIR10	AT4G14930.1	9E-88	Survival protein SurE-like phosphatase/nucleotidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	60918083	60923705	+
GWHAAZE00000006	mRNA	60918083	60923705	+
GWHAAZE00000006	exon	60918083	60918105	+
GWHAAZE00000006	exon	60918187	60918285	+
GWHAAZE00000006	exon	60918759	60918814	+
GWHAAZE00000006	exon	60920836	60920900	+
GWHAAZE00000006	exon	60921206	60921249	+
GWHAAZE00000006	exon	60921795	60921872	+
GWHAAZE00000006	exon	60922170	60922323	+
GWHAAZE00000006	exon	60922622	60922799	+
GWHAAZE00000006	exon	60923457	60923512	+
GWHAAZE00000006	exon	60923598	60923705	+
GWHAAZE00000006	CDS	60918083	60918105	+
GWHAAZE00000006	CDS	60918187	60918285	+
GWHAAZE00000006	CDS	60918759	60918814	+
GWHAAZE00000006	CDS	60920836	60920900	+
GWHAAZE00000006	CDS	60921206	60921249	+
GWHAAZE00000006	CDS	60921795	60921872	+
GWHAAZE00000006	CDS	60922170	60922323	+
GWHAAZE00000006	CDS	60922622	60922799	+
GWHAAZE00000006	CDS	60923457	60923512	+
GWHAAZE00000006	CDS	60923598	60923705	+

Transcript Sequence
>GWHTAAZE021787 ATGCGTAGCAAAGTAGATATGATGGAAAAGTCAGCAGTGAGCCACAGTATTACCTGGCGTCATGCTATTTCTGTCAAGAGAGTGGATATTAATGGAGCAACGGCTTTTGCAGTTTCTGGCAACTGTATGCCTGTATACAAGGAAGCTTTGTTAGCCGACAACGTGGGATACTATGGAGGAACTCCTGCAGACTGTACTTCTTTGGGAATCACCAAATCAATCTTTTCTTCAGTGCCTGATCTGGTAATTAGTGGCATAAATATGGGTAGTAACTGCGGTTATCACATTGTTTACTCAGGAACAGTAGCAGCTGCTCGGGAGGCCTTTTTCTATGGTGTACCTTCTCTATCATTATCATATGACTGGGTTGAAGGAAAGAGCAGTATTAGCGATTTTACACTGGGTGCTGAGGCTTGCTTACCCATCATTAATGCAATTTTGGCTGAGATCAAGAATAAAACCTACCCTCAGAGATGTTTTCTGAATATAGATTTACCAACAAATGTTGCAAATCATAGGGGATATAAATTGACCAATCAGGGGGTGAGTATATTCAAAATGGGGTGGAGGCAAGTTACTTCTGATGCACAAGGAGATAAAATGTTATCAACTATGTCAATGGAGACAAATTCATCAACATTTTCAGATATCAGTGCTTCAACTGTATGTCAAGAACATCTTTTATTCAGGAGAGTAAGACCTCAGAGGCAAGAAGATGGAGACAAGGACCACGGTTCCCTCAAAGATGGATATATAACTGTGACTCCTCTCGGTGCCCTATCTCACGCAGAGGTAGATTGTCAGAAATTTTTCAAAGAATGGCTGCCGGCTGTCACTGACCGATCTTCTTCGGCCTTATAA

Network for GWHGAAZE021763

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01975.18	SurE	9	183	4.90E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03787	surE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240
		Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.523
	SRR3591706	second leaf	23.086
	SRR3591707	mature leaf	56.094
	SRR3591708	Shoot apex	18.219
	SRR3591709	Stem	112.374
	SRR3591710	White floral bud	36.797
	SRR3591711	White flower	42.966
	SRR3591712	Green floral bud	38.590
	SRR3591713	Yellow flower	16.585
SRP173429	SRR8316895	Juvenile bud stage	17.403
	SRR8316896	Juvenile bud stage	18.937
	SRR8316897	Juvenile bud stage	9.300
	SRR8316894	Third green stage	9.172
	SRR8316900	Third green stage	41.064
	SRR8316901	Third green stage	34.904
	SRR8316898	Complete white stage	20.950
	SRR8316899	Complete white stage	63.951
	SRR8316903	Complete white stage	33.284
	SRR8316902	Silver flowering stage	24.012
	SRR8316904	Silver flowering stage	30.721
	SRR8316905	Silver flowering stage	13.559
	SRR8316906	Gold flowering stage	24.997
	SRR8316907	Gold flowering stage	25.171
	SRR8316908	Gold flowering stage	19.414
SRP132670	SRR6706286	Control	14.916
	SRR6706287	Light intensity 50%	16.272
	SRR6706288	Light intensity 20%	16.746
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.232
	CNS0095593	Slightly white alabastrum(diploid) 2	58.390
	CNS0095594	Slightly white alabastrum(diploid) 3	36.317
	CNS0095595	Whole white alabastrum(diploid) 2	47.016
	CNS0095596	Whole white alabastrum(diploid) 3	32.897
	CNS0095597	Whole white alabastrum(diploid) 4	38.491
	CNS0095598	Silvery flower (diploied) 1	58.344
	CNS0095599	Silvery flower (diploied) 2	50.951
	CNS0095600	Silvery flower (diploied) 3	59.544
	CNS0095601	Golden flower (diploid) 1	42.386
	CNS0095602	Golden flower (diploid) 2	38.841
	CNS0095603	Golden flower (diploid) 3	35.240
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.749
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.637
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.765
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.084
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.670
	CNS0095610	Silvery flower (tetraploid) 1	49.227
	CNS0095611	Silvery flower (tetraploid) 2	40.671
	CNS0095612	Silvery flower (tetraploid) 3	44.482
	CNS0095613	Golden flower (tetraploid) 1	23.955
	CNS0095614	Golden flower (tetraploid) 2	22.016
	CNS0095615	Golden flower (tetraploid) 3	10.229
CRA001975	CRR073297	Stem 1	18.573
	CRR073298	Stem 2	21.860
	CRR073299	Stem 3	17.929
	CRR073300	Leaf 1	33.393
	CRR073301	Leaf 2	34.728
	CRR073302	Leaf 3	37.480
	CRR073303	Juvenile bud 1	44.136
	CRR073304	Juvenile bud 2	31.977
	CRR073305	Juvenile bud 3	42.607
	CRR073306	Third green 1	58.620
	CRR073307	Third green 2	47.946
	CRR073308	Third green 3	49.805
	CRR073309	Second white 1	18.029
	CRR073310	Second white 2	17.820
	CRR073311	Second white 3	9.143
	CRR073312	Silver flowering 1	4.397
	CRR073313	Silver flowering 2	3.122
	CRR073314	Silver flowering 3	3.877
	CRR073315	Gold flowering 1	26.518
	CRR073316	Gold flowering 2	26.940
	CRR073317	Gold flowering 3	23.559
	CRR073318	Tawny withering 1	88.862
	CRR073319	Tawny withering 2	154.837
	CRR073320	Tawny withering 3	97.386