Detail information of GWHGAAZE021766


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI26289.30unnamed protein product [Vitis vinifera]
Swissprottr|Q9LUJ2|PP249_ARATH2E-166Pentatricopeptide repeat-containing protein At3g22690
trEMBLtr|A0A061EL66|A0A061EL66_THECC0Regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon sta... {ECO:0000313|EMBL:EOY05750.1}
TAIR10AT3G22690.25E-133Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6098609960988243-
GWHAAZE00000006mRNA6098609960988243-
GWHAAZE00000006exon6098790860988243-
GWHAAZE00000006exon6098743160987625-
GWHAAZE00000006exon6098609960987037-
GWHAAZE00000006CDS6098790860988243-
GWHAAZE00000006CDS6098743160987625-
GWHAAZE00000006CDS6098609960987037-
Transcript Sequence

Network for GWHGAAZE021766

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.7PPR_2721121.90E-10
PF01535.21PPR1551800.031
PF13041.7PPR_21812292.20E-07
PF01535.21PPR2552810.0032
PF14432.7DYW_deaminase3554781.00E-38
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.071
SRR3591706second leaf0.411
SRR3591707mature leaf1.534
SRR3591708Shoot apex2.041
SRR3591709Stem0.280
SRR3591710White floral bud1.523
SRR3591711White flower1.403
SRR3591712Green floral bud1.931
SRR3591713Yellow flower1.408
SRP173429 SRR8316895Juvenile bud stage 0.756
SRR8316896Juvenile bud stage 1.400
SRR8316897Juvenile bud stage 0.488
SRR8316894Third green stage 0.964
SRR8316900Third green stage 3.107
SRR8316901Third green stage 2.712
SRR8316898Complete white stage 0.707
SRR8316899Complete white stage 2.915
SRR8316903Complete white stage 0.546
SRR8316902Silver flowering stage0.873
SRR8316904Silver flowering stage1.161
SRR8316905Silver flowering stage0.597
SRR8316906Gold flowering stage 2.067
SRR8316907Gold flowering stage 2.534
SRR8316908Gold flowering stage 1.651
SRP132670SRR6706286Control2.540
SRR6706287Light intensity 50%2.383
SRR6706288Light intensity 20%2.635
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.013
CNS0095593Slightly white alabastrum(diploid) 21.987
CNS0095594Slightly white alabastrum(diploid) 31.612
CNS0095595Whole white alabastrum(diploid) 22.119
CNS0095596Whole white alabastrum(diploid) 31.964
CNS0095597Whole white alabastrum(diploid) 41.366
CNS0095598Silvery flower (diploied) 12.579
CNS0095599Silvery flower (diploied) 21.183
CNS0095600Silvery flower (diploied) 33.440
CNS0095601Golden flower (diploid) 11.428
CNS0095602Golden flower (diploid) 22.462
CNS0095603Golden flower (diploid) 32.138
CNS0095604Slightly white alabastrum(tetraploid) 12.125
CNS0095605Slightly white alabastrum(tetraploid) 22.186
CNS0095606Slightly white alabastrum(tetraploid) 32.986
CNS0095607Whole white alabastrum(tetraploid) 11.253
CNS0095608Whole white alabastrum(tetraploid) 21.811
CNS0095609Whole white alabastrum(tetraploid) 33.083
CNS0095610Silvery flower (tetraploid) 13.135
CNS0095611Silvery flower (tetraploid) 23.533
CNS0095612Silvery flower (tetraploid) 32.119
CNS0095613Golden flower (tetraploid) 10.913
CNS0095614Golden flower (tetraploid) 22.604
CNS0095615Golden flower (tetraploid) 30.689
CRA001975CRR073297Stem 12.868
CRR073298Stem 23.615
CRR073299Stem 32.876
CRR073300Leaf 12.694
CRR073301Leaf 22.655
CRR073302Leaf 33.249
CRR073303Juvenile bud 15.046
CRR073304Juvenile bud 22.766
CRR073305Juvenile bud 34.700
CRR073306Third green 11.379
CRR073307Third green 21.007
CRR073308Third green 31.210
CRR073309Second white 12.782
CRR073310Second white 21.737
CRR073311Second white 32.579
CRR073312Silver flowering 10.992
CRR073313Silver flowering 21.737
CRR073314Silver flowering 31.648
CRR073315Gold flowering 18.999
CRR073316Gold flowering 214.266
CRR073317Gold flowering 36.884
CRR073318Tawny withering 12.858
CRR073319Tawny withering 21.694
CRR073320Tawny withering 32.282