Gene detail

Detail information of GWHGAAZE021767

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009770245.1	0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|F4JIF5\|TCX2_ARATH	1E-144	Protein tesmin/TSO1-like CXC 2
trEMBL	tr\|A0A067KVT5\|A0A067KVT5_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP40217.1}
TAIR10	AT4G14770.1	9E-107	TESMIN/TSO1-like CXC 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61002865	61008303	+
GWHAAZE00000006	mRNA	61002865	61008303	+
GWHAAZE00000006	exon	61002865	61003031	+
GWHAAZE00000006	exon	61003116	61003728	+
GWHAAZE00000006	exon	61004773	61005008	+
GWHAAZE00000006	exon	61005659	61005733	+
GWHAAZE00000006	exon	61006242	61006422	+
GWHAAZE00000006	exon	61006501	61006599	+
GWHAAZE00000006	exon	61006691	61006757	+
GWHAAZE00000006	exon	61007133	61007277	+
GWHAAZE00000006	exon	61007958	61008303	+
GWHAAZE00000006	CDS	61002865	61003031	+
GWHAAZE00000006	CDS	61003116	61003728	+
GWHAAZE00000006	CDS	61004773	61005008	+
GWHAAZE00000006	CDS	61005659	61005733	+
GWHAAZE00000006	CDS	61006242	61006422	+
GWHAAZE00000006	CDS	61006501	61006599	+
GWHAAZE00000006	CDS	61006691	61006757	+
GWHAAZE00000006	CDS	61007133	61007277	+
GWHAAZE00000006	CDS	61007958	61008303	+

Transcript Sequence
>GWHTAAZE021791 ATGCAGGATTCCCCTGTCTTCAACTATATCAACAGTCTTTCTCCAATCCAACCGGTTAAGTCCGTCCATATTACTCAGACATTCAATTCACTTAGTTTTTCATCCCCTCCATCTGTTTTCACATCTCCCCATGTCAGTTCCCTCAAAGAATCTAGGTTTTTAAGAAGGCATCACTCTGATCTGTCAAGACCCGAGTTCTCTTTAGAGAATGGGAACAAAGTTGGTATAAAAGATGCTGCTCATAACTCCGCTGAGCGACAGGGAAATGCTGAATTAGCAGTTCCTGGTGGTGAAGCTTCTAAGCCTGCAATTGAGTTCTCAAGAACCTTAAACTATGACTGTGTTAGCCCTAACTGCAACCCAATTCGTAGCTGCAGTGTTGAAACCAAATGCAGGTCTTCATTTGATCCTTGTGTTCAAGATGTTCTTGATAAGGGTTCGTTTGGAAGTGAAGTGTGTGTAGATGGTATAGGCCAAACAGATCAAAATCAAGAAGCTGCTGAATGTGATTGGGAGACTTTGATTTCTGCTGCTGACCTATTGACTTTTGATTCGCCCACTGACACAGAAACCTTGAAAGACCCTTGTACTGATGATTTCCCAAAAACTCAAGCTGTTGGTGCAGTTGGTTTGAGCGAGCGAAATGAATCGGAAAACCCTTCAACTCAACCTGGAGAAGCTGGTGATCTTAGGAAAGTAGTTGAGAACCAATCCAACTTTGTTTGTATGTCGTTAGAAAACTGTGTTGCAGGGGAGTCAAGTGAGAAAGTGGACAACGAGCTTGCTTCTAATTTGAACCGAGGTACGAGAAGACGCTGTCTTGTTTTTGAGATGGTGGGGGCCCGCACGAAGCACTTCGGTGATGGTAACATAGTTTCCAATGATAAGCAAATAGTTCCTTTAAAGCTGGGAATTGGACTGCATTTAAATGCTCTTGCAACAACTTCAGTGGACCTCCACAAGGTTATCAAGCATGAAACTTTGGCTTTGGAAGGACATCTTATAAGTGTGCCACGGCGTAGATTGGAAAGTGGTGGGGAAAGTGAGGCCTGTAAACGTTGTAATTGTAAGAAGTCAAAGTGCTTGAAGCTTTACTGCGAATGCTTTGCTGCCGGTGTCTACTGTGTGGAACCATGTTCATGTCAAGAATGCTTCAACAAACCTATTCATGAAGATACCGTCCTTGCAACTCGAAAGCAGATTGAATCTCGCAATCCACTTGCATTTGCTCCCAAAGTGATTCGGAGCTCTGATTCTATACTAGAAATTGGGGATGAATCCATCAAGAATACGCCTGCTTCAGCTCGACATAAAAGAGGATGCAACTGCAAGAAATCTGGCTGCCTAAAGAAATACTGCGAATGCTATCAGGGTGGCGTTGGATGCTCAATCAACTGCAGATGTGAAGGGTGTAAGAATGCATTTGGCAGAAAGGATGGAATGGATGCTGAACTAGAAGAAGAGGAAGTAGATGAATGTGAAAACAGCATGGTTGATAGAGCTTTGCAGAAACCTGTAGTCCAGAACGAAGCTGAGGCGATCATGGATTCTGCTCCTCTAGCAACACCTTTGCCATTTGGCAGATCGTTGATGCAGCTACCTTTCTCCTCAAAAAGAAAGCCACCGCGATCCTCTTTTCTTGCCATTGGATCATCCTCTCCTGGGATGTTTGGTAGCCATAGATTTGGAAGGCCAAATTTTGTTCCACCGGAATCCAAGTTTGATAAGCACTTTCAAAACATTCAGGAAGATGAGATGCCAGAGGTTCTCCACCATAATGGATCTCCAGCCACCAGTGTCAAGTCATTGTCGCCAAACAGTAAGAGGGTTTCTCCACCTCACATTGGGAGTTTTTCTGGTCAAAGAAGCAGCAGGAAGTTGATACTTCGATCTATTCCTTCCTTTCCTTCTCTCACCCCGAAGGACTAA

Network for GWHGAAZE021767

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03638.16	TCR	352	387	1.30E-11
PF03638.16	TCR	438	474	1.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	CPP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.476
	SRR3591706	second leaf	43.542
	SRR3591707	mature leaf	38.489
	SRR3591708	Shoot apex	89.873
	SRR3591709	Stem	23.494
	SRR3591710	White floral bud	4.913
	SRR3591711	White flower	5.040
	SRR3591712	Green floral bud	9.290
	SRR3591713	Yellow flower	1.843
SRP173429	SRR8316895	Juvenile bud stage	10.139
	SRR8316896	Juvenile bud stage	11.032
	SRR8316897	Juvenile bud stage	8.382
	SRR8316894	Third green stage	4.531
	SRR8316900	Third green stage	9.081
	SRR8316901	Third green stage	8.845
	SRR8316898	Complete white stage	1.268
	SRR8316899	Complete white stage	11.573
	SRR8316903	Complete white stage	2.775
	SRR8316902	Silver flowering stage	2.372
	SRR8316904	Silver flowering stage	2.968
	SRR8316905	Silver flowering stage	1.334
	SRR8316906	Gold flowering stage	10.436
	SRR8316907	Gold flowering stage	10.478
	SRR8316908	Gold flowering stage	14.815
SRP132670	SRR6706286	Control	7.833
	SRR6706287	Light intensity 50%	8.024
	SRR6706288	Light intensity 20%	10.054
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.729
	CNS0095593	Slightly white alabastrum(diploid) 2	12.017
	CNS0095594	Slightly white alabastrum(diploid) 3	8.896
	CNS0095595	Whole white alabastrum(diploid) 2	6.289
	CNS0095596	Whole white alabastrum(diploid) 3	6.680
	CNS0095597	Whole white alabastrum(diploid) 4	6.533
	CNS0095598	Silvery flower (diploied) 1	12.106
	CNS0095599	Silvery flower (diploied) 2	9.551
	CNS0095600	Silvery flower (diploied) 3	6.376
	CNS0095601	Golden flower (diploid) 1	7.214
	CNS0095602	Golden flower (diploid) 2	7.399
	CNS0095603	Golden flower (diploid) 3	8.599
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.915
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.757
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.714
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.425
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.029
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.315
	CNS0095610	Silvery flower (tetraploid) 1	1.757
	CNS0095611	Silvery flower (tetraploid) 2	2.401
	CNS0095612	Silvery flower (tetraploid) 3	0.809
	CNS0095613	Golden flower (tetraploid) 1	0.256
	CNS0095614	Golden flower (tetraploid) 2	0.408
	CNS0095615	Golden flower (tetraploid) 3	0.030
CRA001975	CRR073297	Stem 1	25.901
	CRR073298	Stem 2	23.833
	CRR073299	Stem 3	25.989
	CRR073300	Leaf 1	13.633
	CRR073301	Leaf 2	15.410
	CRR073302	Leaf 3	15.687
	CRR073303	Juvenile bud 1	11.903
	CRR073304	Juvenile bud 2	7.163
	CRR073305	Juvenile bud 3	17.970
	CRR073306	Third green 1	2.803
	CRR073307	Third green 2	2.076
	CRR073308	Third green 3	3.871
	CRR073309	Second white 1	5.066
	CRR073310	Second white 2	5.813
	CRR073311	Second white 3	7.200
	CRR073312	Silver flowering 1	3.793
	CRR073313	Silver flowering 2	2.631
	CRR073314	Silver flowering 3	1.816
	CRR073315	Gold flowering 1	94.470
	CRR073316	Gold flowering 2	134.216
	CRR073317	Gold flowering 3	86.623
	CRR073318	Tawny withering 1	30.910
	CRR073319	Tawny withering 2	20.302
	CRR073320	Tawny withering 3	32.707