Detail information of GWHGAAZE021776


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273038.15.29682E-61PREDICTED: F-box protein At2g27310 [Vitis vinifera]
Swissprottr|Q9SIH5|FB322_ARATH1E-46Probable F-box protein At1g60180
trEMBLtr|F6HHD6|F6HHD6_VITVI2E-61Putative uncharacterized protein {ECO:0000313|EMBL:CCB51632.1}
TAIR10AT2G36090.17E-38F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6121744261218104+
GWHAAZE00000006mRNA6121744261218104+
GWHAAZE00000006exon6121744261217652+
GWHAAZE00000006exon6121769261218104+
GWHAAZE00000006CDS6121744261217652+
GWHAAZE00000006CDS6121769261218104+
Transcript Sequence

Network for GWHGAAZE021776

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.271
SRR3591706second leaf1.012
SRR3591707mature leaf0.961
SRR3591708Shoot apex3.595
SRR3591709Stem12.834
SRR3591710White floral bud5.612
SRR3591711White flower6.914
SRR3591712Green floral bud2.524
SRR3591713Yellow flower0.972
SRP173429 SRR8316895Juvenile bud stage 15.667
SRR8316896Juvenile bud stage 4.235
SRR8316897Juvenile bud stage 18.470
SRR8316894Third green stage 3.179
SRR8316900Third green stage 4.340
SRR8316901Third green stage 6.627
SRR8316898Complete white stage 0.606
SRR8316899Complete white stage 17.141
SRR8316903Complete white stage 0.659
SRR8316902Silver flowering stage0.154
SRR8316904Silver flowering stage0.416
SRR8316905Silver flowering stage0.288
SRR8316906Gold flowering stage 0.565
SRR8316907Gold flowering stage 1.268
SRR8316908Gold flowering stage 0.628
SRP132670SRR6706286Control2.660
SRR6706287Light intensity 50%3.489
SRR6706288Light intensity 20%1.623
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.916
CNS0095593Slightly white alabastrum(diploid) 211.926
CNS0095594Slightly white alabastrum(diploid) 312.065
CNS0095595Whole white alabastrum(diploid) 213.842
CNS0095596Whole white alabastrum(diploid) 31.702
CNS0095597Whole white alabastrum(diploid) 49.596
CNS0095598Silvery flower (diploied) 144.563
CNS0095599Silvery flower (diploied) 257.462
CNS0095600Silvery flower (diploied) 320.320
CNS0095601Golden flower (diploid) 150.423
CNS0095602Golden flower (diploid) 237.355
CNS0095603Golden flower (diploid) 332.115
CNS0095604Slightly white alabastrum(tetraploid) 11.468
CNS0095605Slightly white alabastrum(tetraploid) 21.868
CNS0095606Slightly white alabastrum(tetraploid) 30.922
CNS0095607Whole white alabastrum(tetraploid) 11.442
CNS0095608Whole white alabastrum(tetraploid) 21.491
CNS0095609Whole white alabastrum(tetraploid) 30.331
CNS0095610Silvery flower (tetraploid) 10.570
CNS0095611Silvery flower (tetraploid) 20.272
CNS0095612Silvery flower (tetraploid) 30.821
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.275
CNS0095615Golden flower (tetraploid) 30.095
CRA001975CRR073297Stem 16.711
CRR073298Stem 26.846
CRR073299Stem 311.865
CRR073300Leaf 18.281
CRR073301Leaf 214.822
CRR073302Leaf 39.269
CRR073303Juvenile bud 18.635
CRR073304Juvenile bud 211.282
CRR073305Juvenile bud 319.576
CRR073306Third green 13.399
CRR073307Third green 22.224
CRR073308Third green 32.086
CRR073309Second white 10.925
CRR073310Second white 21.199
CRR073311Second white 32.505
CRR073312Silver flowering 11.848
CRR073313Silver flowering 21.104
CRR073314Silver flowering 32.052
CRR073315Gold flowering 12.578
CRR073316Gold flowering 29.490
CRR073317Gold flowering 312.639
CRR073318Tawny withering 15.592
CRR073319Tawny withering 237.016
CRR073320Tawny withering 37.795