Gene detail

Detail information of GWHGAAZE021780

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004247828.1	0	PREDICTED: 3-ketoacyl-CoA thiolase 2, peroxisomal [Solanum lycopersicum]
COG	YP_360436.1	4E-120	acetyl-CoA acetyltransferase
Swissprot	tr\|Q56WD9\|THIK2_ARATH	0	3-ketoacyl-CoA thiolase 2, peroxisomal (Precursor)
trEMBL	tr\|K4CWH3\|K4CWH3_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc09g091470.2.1}
TAIR10	AT2G33150.1	0	peroxisomal 3-ketoacyl-CoA thiolase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61286129	61291604	+
GWHAAZE00000006	mRNA	61286129	61291604	+
GWHAAZE00000006	exon	61286129	61286224	+
GWHAAZE00000006	exon	61287657	61287733	+
GWHAAZE00000006	exon	61287841	61287925	+
GWHAAZE00000006	exon	61288021	61288147	+
GWHAAZE00000006	exon	61288594	61288692	+
GWHAAZE00000006	exon	61288837	61288892	+
GWHAAZE00000006	exon	61289001	61289108	+
GWHAAZE00000006	exon	61289189	61289266	+
GWHAAZE00000006	exon	61289385	61289517	+
GWHAAZE00000006	exon	61289879	61289975	+
GWHAAZE00000006	exon	61290258	61290381	+
GWHAAZE00000006	exon	61290489	61290597	+
GWHAAZE00000006	exon	61291294	61291377	+
GWHAAZE00000006	exon	61291495	61291604	+
GWHAAZE00000006	CDS	61286129	61286224	+
GWHAAZE00000006	CDS	61287657	61287733	+
GWHAAZE00000006	CDS	61287841	61287925	+
GWHAAZE00000006	CDS	61288021	61288147	+
GWHAAZE00000006	CDS	61288594	61288692	+
GWHAAZE00000006	CDS	61288837	61288892	+
GWHAAZE00000006	CDS	61289001	61289108	+
GWHAAZE00000006	CDS	61289189	61289266	+
GWHAAZE00000006	CDS	61289385	61289517	+
GWHAAZE00000006	CDS	61289879	61289975	+
GWHAAZE00000006	CDS	61290258	61290381	+
GWHAAZE00000006	CDS	61290489	61290597	+
GWHAAZE00000006	CDS	61291294	61291377	+
GWHAAZE00000006	CDS	61291495	61291604	+

Transcript Sequence
>GWHTAAZE021804 ATGGAGAAAGCAATCGAGAGACAGAGAGTTTTGCTACAGCACCTTCGTCCTTCTTCAACCTCTTCTTCCCTCGAGAACATAGATTCCTCTCTCTCCGCATCTGTCTGTTTGGCAGGGGATAGTTCTGGATATCAGAGGACTTCTGTTTTTGGGGATGATGTAGTCATAGTAGCTGCATACCGGACTCCACTTTGCAAGTCAAAGAGGGGCGGTTTCAAGGACACTTATCCTGATGATTTGCTTTCTCCAGTTTTGAAGGCTCTGATAGAGAAAACAAATTTGAACCCAAGTGAGGTTGGAGACATTGTTGTGGGCACAGTGTTGGCCCCAGGCTCTCAGAGAGCAAGTGAATGCAGGATGGCTGCATTCTATGCTGGCTTCCCTGAAACTGTGCCAATCAGAACTGTGAATAGGCAATGTTCATCGGGTCTTCAAGCAGTAGCTGACGTAGCTGCAGCTATTAAAGCTGGATTTTATGACATTGGAATTGGTGCTGGGTTGGAGTCTATGACCACGAATCCTATGGCTTGGGAAGGATCAGTAAAGGAAATGGCAAAAGCGCAAGATTGTCTTCTTCCCATGGGAGTGACTTCAGAAAATGTTGCACATCGTTTTGGTGTCACAAGGCAGGAGCAAGATCAAGCTGCGGTTGATTCGCATAGAAAGGCTGCTGCTGCAACTGCTGCTGGCAAATTTAAAGATGAGATAATACCTGTGAATACCAAGATTGTTGACCCAAAAAGTGGAGATGAGAAGCCTGTTACTATTTCTGTTGATGATGGGATTCGCCCAAATACAACAATAGCGGATCTTAGAAAACTGAAAGCAGTATTTAAGAAAGATGGGACCACCACTGCTGGAAATTCTAGCCAGGTGTCTGATGGTGCCGGAGCAGTCCTCCTCATGAAGAGAACTGTTGCGATGCAGAAAGGATTACCAATTCTTGGTGTATTTAGGACTTTTGCCGCCGTTGGTGTAGACCCTGCCATCATGGGTGTTGGTCCAGCAGTTGCAATCCCAGCTGCAGTGAAGTCTGCTGGTCTCGAACTCGATAACATTGATCTTTTTGAGATAAATGAGGCGTTTGCGTCCCAATTTGTGTATTGCCGTAAGAAGCTGGAGCTCGATCCAGAAAAGATCAATGTGAATGGAGGTGCAATGGCCATTGGGCATCCTTTGGGTGCAACAGGAGCACGTTGTGTGGCCACACTATTGCATGAGATGAAGCGTCGTGGTAAAGACTGCCGATTTGGTGTGGTGTCGATGTGTATAGGCACAGGAATGGGGGCTGCTGCTGTTTTCGAAAGAGGGGATGCATGTGATGAACTCTGCAATACACGGAGAATCGAAACCAACAATCTTCTGTCCAAGGATGCCCGGTAG

Network for GWHGAAZE021780

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00108.24	Thiolase_N	54	304	6.40E-78
PF02803.19	Thiolase_C	314	436	6.70E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07513	ACAA1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid degradation	map00071
		alpha-Linolenic acid metabolism	map00592
		Biosynthesis of unsaturated fatty acids	map01040
		Valine, leucine and isoleucine degradation	map00280
		Peroxisome	map04146
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.409
	SRR3591706	second leaf	22.902
	SRR3591707	mature leaf	23.615
	SRR3591708	Shoot apex	43.356
	SRR3591709	Stem	21.590
	SRR3591710	White floral bud	23.291
	SRR3591711	White flower	37.596
	SRR3591712	Green floral bud	22.824
	SRR3591713	Yellow flower	41.361
SRP173429	SRR8316895	Juvenile bud stage	20.782
	SRR8316896	Juvenile bud stage	32.842
	SRR8316897	Juvenile bud stage	14.561
	SRR8316894	Third green stage	11.481
	SRR8316900	Third green stage	29.590
	SRR8316901	Third green stage	31.537
	SRR8316898	Complete white stage	19.996
	SRR8316899	Complete white stage	31.305
	SRR8316903	Complete white stage	29.517
	SRR8316902	Silver flowering stage	36.940
	SRR8316904	Silver flowering stage	43.737
	SRR8316905	Silver flowering stage	18.851
	SRR8316906	Gold flowering stage	71.869
	SRR8316907	Gold flowering stage	85.345
	SRR8316908	Gold flowering stage	90.861
SRP132670	SRR6706286	Control	31.382
	SRR6706287	Light intensity 50%	33.539
	SRR6706288	Light intensity 20%	32.544
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.253
	CNS0095593	Slightly white alabastrum(diploid) 2	27.326
	CNS0095594	Slightly white alabastrum(diploid) 3	29.045
	CNS0095595	Whole white alabastrum(diploid) 2	24.040
	CNS0095596	Whole white alabastrum(diploid) 3	23.717
	CNS0095597	Whole white alabastrum(diploid) 4	20.776
	CNS0095598	Silvery flower (diploied) 1	46.238
	CNS0095599	Silvery flower (diploied) 2	40.312
	CNS0095600	Silvery flower (diploied) 3	51.730
	CNS0095601	Golden flower (diploid) 1	49.058
	CNS0095602	Golden flower (diploid) 2	53.579
	CNS0095603	Golden flower (diploid) 3	53.615
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.901
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.498
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.151
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.666
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.308
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.525
	CNS0095610	Silvery flower (tetraploid) 1	79.652
	CNS0095611	Silvery flower (tetraploid) 2	54.810
	CNS0095612	Silvery flower (tetraploid) 3	98.902
	CNS0095613	Golden flower (tetraploid) 1	43.605
	CNS0095614	Golden flower (tetraploid) 2	54.631
	CNS0095615	Golden flower (tetraploid) 3	58.937
CRA001975	CRR073297	Stem 1	30.744
	CRR073298	Stem 2	29.948
	CRR073299	Stem 3	30.474
	CRR073300	Leaf 1	29.998
	CRR073301	Leaf 2	33.249
	CRR073302	Leaf 3	28.568
	CRR073303	Juvenile bud 1	32.180
	CRR073304	Juvenile bud 2	33.678
	CRR073305	Juvenile bud 3	33.240
	CRR073306	Third green 1	51.889
	CRR073307	Third green 2	91.958
	CRR073308	Third green 3	59.997
	CRR073309	Second white 1	77.773
	CRR073310	Second white 2	71.591
	CRR073311	Second white 3	77.699
	CRR073312	Silver flowering 1	60.798
	CRR073313	Silver flowering 2	59.524
	CRR073314	Silver flowering 3	52.579
	CRR073315	Gold flowering 1	41.304
	CRR073316	Gold flowering 2	49.680
	CRR073317	Gold flowering 3	32.158
	CRR073318	Tawny withering 1	38.016
	CRR073319	Tawny withering 2	38.221
	CRR073320	Tawny withering 3	34.325