Detail information of GWHGAAZE021788


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004252330.10PREDICTED: dihydroxy-acid dehydratase, chloroplastic-like [Solanum lycopersicum]
COGYP_003371816.10dihydroxy-acid dehydratase
Swissprottr|Q9LIR4|ILVD_ARATH0Dihydroxy-acid dehydratase, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00012} (Precursor)
trEMBLtr|K4DF90|K4DF90_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc12g043020.1.1}
TAIR10AT3G23940.10dehydratase family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6146831961481454-
GWHAAZE00000006mRNA6146831961481454-
GWHAAZE00000006exon6146831961468632-
GWHAAZE00000006exon6146916461469236-
GWHAAZE00000006exon6147162961471752-
GWHAAZE00000006exon6147201861472060-
GWHAAZE00000006exon6147359661473754-
GWHAAZE00000006exon6147461861474698-
GWHAAZE00000006exon6147482461474904-
GWHAAZE00000006exon6147545261475553-
GWHAAZE00000006exon6147619761476267-
GWHAAZE00000006exon6147665561476708-
GWHAAZE00000006exon6147680861476877-
GWHAAZE00000006exon6147753261477643-
GWHAAZE00000006exon6147772861477922-
GWHAAZE00000006exon6147820661478360-
GWHAAZE00000006exon6147906261479109-
GWHAAZE00000006exon6147997161480042-
GWHAAZE00000006exon6148079161481454-
GWHAAZE00000006five_prime_UTR6148131961481454-
GWHAAZE00000006CDS6148079161481318-
GWHAAZE00000006CDS6147997161480042-
GWHAAZE00000006CDS6147906261479109-
GWHAAZE00000006CDS6147820661478360-
GWHAAZE00000006CDS6147772861477922-
GWHAAZE00000006CDS6147753261477643-
GWHAAZE00000006CDS6147680861476877-
GWHAAZE00000006CDS6147665561476708-
GWHAAZE00000006CDS6147619761476267-
GWHAAZE00000006CDS6147545261475553-
GWHAAZE00000006CDS6147482461474904-
GWHAAZE00000006CDS6147461861474698-
GWHAAZE00000006CDS6147359661473754-
GWHAAZE00000006CDS6147201861472060-
GWHAAZE00000006CDS6147162961471752-
GWHAAZE00000006CDS6146916461469236-
GWHAAZE00000006CDS6146860061468632-
GWHAAZE00000006three_prime_UTR6146831961468599-
Transcript Sequence

Network for GWHGAAZE021788

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00920.22ILVD_EDD854034.80E-128
PF00920.22ILVD_EDD4114971.00E-33
PF00920.22ILVD_EDD5245773.70E-11
PF01423.23LSM5926596.20E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01687ilvD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf48.859
SRR3591706second leaf13.451
SRR3591707mature leaf8.218
SRR3591708Shoot apex52.826
SRR3591709Stem28.188
SRR3591710White floral bud20.251
SRR3591711White flower24.951
SRR3591712Green floral bud31.573
SRR3591713Yellow flower23.618
SRP173429 SRR8316895Juvenile bud stage 25.407
SRR8316896Juvenile bud stage 36.471
SRR8316897Juvenile bud stage 16.444
SRR8316894Third green stage 12.830
SRR8316900Third green stage 35.692
SRR8316901Third green stage 32.518
SRR8316898Complete white stage 7.234
SRR8316899Complete white stage 34.003
SRR8316903Complete white stage 12.341
SRR8316902Silver flowering stage9.313
SRR8316904Silver flowering stage9.489
SRR8316905Silver flowering stage5.488
SRR8316906Gold flowering stage 16.741
SRR8316907Gold flowering stage 19.410
SRR8316908Gold flowering stage 19.917
SRP132670SRR6706286Control26.965
SRR6706287Light intensity 50%27.673
SRR6706288Light intensity 20%30.385
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.545
CNS0095593Slightly white alabastrum(diploid) 232.136
CNS0095594Slightly white alabastrum(diploid) 332.541
CNS0095595Whole white alabastrum(diploid) 224.395
CNS0095596Whole white alabastrum(diploid) 323.545
CNS0095597Whole white alabastrum(diploid) 420.026
CNS0095598Silvery flower (diploied) 131.661
CNS0095599Silvery flower (diploied) 226.233
CNS0095600Silvery flower (diploied) 323.158
CNS0095601Golden flower (diploid) 124.236
CNS0095602Golden flower (diploid) 221.544
CNS0095603Golden flower (diploid) 320.546
CNS0095604Slightly white alabastrum(tetraploid) 129.521
CNS0095605Slightly white alabastrum(tetraploid) 227.765
CNS0095606Slightly white alabastrum(tetraploid) 344.758
CNS0095607Whole white alabastrum(tetraploid) 117.269
CNS0095608Whole white alabastrum(tetraploid) 213.375
CNS0095609Whole white alabastrum(tetraploid) 330.341
CNS0095610Silvery flower (tetraploid) 126.522
CNS0095611Silvery flower (tetraploid) 225.832
CNS0095612Silvery flower (tetraploid) 317.246
CNS0095613Golden flower (tetraploid) 112.685
CNS0095614Golden flower (tetraploid) 218.655
CNS0095615Golden flower (tetraploid) 311.523
CRA001975CRR073297Stem 136.589
CRR073298Stem 233.054
CRR073299Stem 333.462
CRR073300Leaf 129.361
CRR073301Leaf 229.585
CRR073302Leaf 333.236
CRR073303Juvenile bud 129.524
CRR073304Juvenile bud 219.209
CRR073305Juvenile bud 332.158
CRR073306Third green 14.665
CRR073307Third green 24.631
CRR073308Third green 36.261
CRR073309Second white 18.022
CRR073310Second white 29.454
CRR073311Second white 36.116
CRR073312Silver flowering 13.692
CRR073313Silver flowering 25.322
CRR073314Silver flowering 34.797
CRR073315Gold flowering 114.032
CRR073316Gold flowering 218.774
CRR073317Gold flowering 313.628
CRR073318Tawny withering 129.991
CRR073319Tawny withering 227.717
CRR073320Tawny withering 333.694