Gene detail

Detail information of GWHGAAZE021812

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006362163.1	0	PREDICTED: 3-ketoacyl-CoA synthase 19-like [Solanum tuberosum]
COG	NP_285649.1	3E-16	chalcone synthase
Swissprot	tr\|Q5XEP9\|KCS17_ARATH	0	3-ketoacyl-CoA synthase 17
trEMBL	tr\|M1A6B6\|M1A6B6_SOLTU	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT5G43760.1	0	3-ketoacyl-CoA synthase 20

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61870330	61873605	+
GWHAAZE00000006	mRNA	61870330	61873605	+
GWHAAZE00000006	exon	61870330	61870821	+
GWHAAZE00000006	exon	61872823	61873605	+
GWHAAZE00000006	CDS	61870330	61870821	+
GWHAAZE00000006	CDS	61872823	61873605	+

Transcript Sequence
>GWHTAAZE021836 ATGGCCACCCTTTACTTTATGAGGCGCCCTCAAAAGGTCTATTTGGTAAATTTTGCGTGTTTTAAACCCCAACCCAACTTGATGTGCCCTAGGGAACTTTTTATGGAACGGTCTACCATTGCAGGGACCTTTAATGAAGAGAATTTGGCCTTTCAGAAGAAAATTCTTGAGAGGTCGGGTTTGGGGCAGAAGACTTATTCCCCTGAGGCGCTTTTGCGGATCCCACATAACCTGTGTATGGCTGAGGCGAGGAAAGAGGCCGAAATGGTGATGTTTGGTGCCATTGATGAGCTTCTGGAGAAGACCAGGGTTAAGGCAAAGGATATTGGGATACTTGTGGTGAATTGTAGCTTGTTTAATCCGACCCCATCTCTTTCGGCTATGGTGGTGAATCATTACAAGCTTAGGGGGAATATTTTGAGCTATAATCTTGGTGGGATGGGTTGTAGTGCTGGATTAATTTCAATTGACCTTGCCAAACAACTTTTACAGGTGCAACCCAACTCTTATGCCTTGGTTGTGAGTACGGAAAACATGACCTTGAACTGGTACTTTGGTAACAATCGGTCAATGCTTGTCACAAATTGTCTCTTTCGAATGGGTGGCGCTGCAATCCTCCTTTCCAACCGATCATCCGATCGTCGTCGATCAAAGTATCAACTAATCCACACTGTACGAACCGTCAAAGGCGTTGATGATAAATGTTATGGCTGTGTGTTTCAAGAAGAAGATGAAAACAAAAACATTGGTGTTGCACTTTCAAAAGACGTAATGGCTGTAGCCGGTGAGGCCTTAAAGACAAATATCACAACTCTCGGGCCCTTAGTCCTTCCCATGTCCGAGCAACTTTTGTTTTTCGCGACCTTGGTCGCGAGAAAAGTTTTTAAAATGAAAATCAAGCCATATATTCCTGATTTTAAGCTTGCATTTGAGCATTTTTGTATTCATGCCGGAGGAAGAGCAGTGCTAGATGAGTTGGAGAAGAACCTTGAACTCACTGAGTGGCATATGGAGCCTTCAAGAATGACTCTTAACCGATTTGGCAATACATCTAGTAGTTCATTGTGGTATGAATTGGCCTATACTGAGGCTAAGGGGAGAATCAGAAAGGGTGATCGGACATGGCAAATTGCTTTTGGGTCCGGTTTCAAGTGTAACAGTGCTGTGTGGCGCGCTCTGAGAACCGTTGATCCAGCCAAGGAGAAGAACCCTTGGATGGATGATATTGATGAATTTCCAGTTCACGTGCCAAAAATTTCACCCGTTCTTTCTTAA

Network for GWHGAAZE021812

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	5	294	2.50E-141
PF08541.11	ACP_syn_III_C	311	391	1.10E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.257
	SRR3591706	second leaf	25.927
	SRR3591707	mature leaf	1.282
	SRR3591708	Shoot apex	35.899
	SRR3591709	Stem	0.326
	SRR3591710	White floral bud	0.264
	SRR3591711	White flower	1.423
	SRR3591712	Green floral bud	3.399
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.603
	SRR8316896	Juvenile bud stage	2.824
	SRR8316897	Juvenile bud stage	3.250
	SRR8316894	Third green stage	0.695
	SRR8316900	Third green stage	1.145
	SRR8316901	Third green stage	1.180
	SRR8316898	Complete white stage	0.028
	SRR8316899	Complete white stage	1.072
	SRR8316903	Complete white stage	0.169
	SRR8316902	Silver flowering stage	0.057
	SRR8316904	Silver flowering stage	0.079
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.850
	SRR6706287	Light intensity 50%	1.025
	SRR6706288	Light intensity 20%	1.177
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.431
	CNS0095593	Slightly white alabastrum(diploid) 2	0.440
	CNS0095594	Slightly white alabastrum(diploid) 3	0.662
	CNS0095595	Whole white alabastrum(diploid) 2	0.137
	CNS0095596	Whole white alabastrum(diploid) 3	0.208
	CNS0095597	Whole white alabastrum(diploid) 4	0.584
	CNS0095598	Silvery flower (diploied) 1	0.051
	CNS0095599	Silvery flower (diploied) 2	0.302
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.020
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.296
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.430
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.674
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.244
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.379
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.622
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.028
	CNS0095612	Silvery flower (tetraploid) 3	0.547
	CNS0095613	Golden flower (tetraploid) 1	0.039
	CNS0095614	Golden flower (tetraploid) 2	0.094
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	6.239
	CRR073298	Stem 2	4.406
	CRR073299	Stem 3	4.570
	CRR073300	Leaf 1	0.882
	CRR073301	Leaf 2	1.814
	CRR073302	Leaf 3	0.331
	CRR073303	Juvenile bud 1	0.190
	CRR073304	Juvenile bud 2	0.014
	CRR073305	Juvenile bud 3	0.159
	CRR073306	Third green 1	0.049
	CRR073307	Third green 2	0.214
	CRR073308	Third green 3	0.080
	CRR073309	Second white 1	0.113
	CRR073310	Second white 2	0.055
	CRR073311	Second white 3	0.267
	CRR073312	Silver flowering 1	0.170
	CRR073313	Silver flowering 2	0.050
	CRR073314	Silver flowering 3	0.018
	CRR073315	Gold flowering 1	36.303
	CRR073316	Gold flowering 2	26.745
	CRR073317	Gold flowering 3	16.711
	CRR073318	Tawny withering 1	0.201
	CRR073319	Tawny withering 2	0.036
	CRR073320	Tawny withering 3	0.595