Detail information of GWHGAAZE021822


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011091314.10PREDICTED: malate dehydrogenase [Sesamum indicum]
COGYP_692968.17E-117malate dehydrogenase
Swissprottr|O48905|MDHC_MEDSA0Malate dehydrogenase, cytoplasmic
trEMBLtr|A9P8R3|A9P8R3_POPTR0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}
TAIR10AT5G43330.19E-169Lactate/malate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene6205189662058363-
GWHAAZE00000006mRNA6205189662058363-
GWHAAZE00000006exon6205189662051990-
GWHAAZE00000006exon6205260262052713-
GWHAAZE00000006exon6205283462052969-
GWHAAZE00000006exon6205340462053681-
GWHAAZE00000006exon6205598162056156-
GWHAAZE00000006exon6205652762056703-
GWHAAZE00000006exon6205832162058363-
GWHAAZE00000006CDS6205832162058363-
GWHAAZE00000006CDS6205652762056703-
GWHAAZE00000006CDS6205598162056156-
GWHAAZE00000006CDS6205340462053681-
GWHAAZE00000006CDS6205283462052969-
GWHAAZE00000006CDS6205260262052713-
GWHAAZE00000006CDS6205189662051990-
Transcript Sequence

Network for GWHGAAZE021822

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00056.24Ldh_1_N171592.90E-30
PF02866.19Ldh_1_C1633318.50E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00025MDH1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270
Proximal tubule bicarbonate reclamationmap04964

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0006108biological_processmalate metabolic process
GO:0019752biological_processcarboxylic acid metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016615molecular_functionmalate dehydrogenase activity
GO:0030060molecular_functionL-malate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.986
SRR3591706second leaf4.481
SRR3591707mature leaf0.000
SRR3591708Shoot apex39.337
SRR3591709Stem9.145
SRR3591710White floral bud1.482
SRR3591711White flower0.585
SRR3591712Green floral bud20.791
SRR3591713Yellow flower0.288
SRP173429 SRR8316895Juvenile bud stage 42.143
SRR8316896Juvenile bud stage 77.582
SRR8316897Juvenile bud stage 39.969
SRR8316894Third green stage 25.876
SRR8316900Third green stage 55.721
SRR8316901Third green stage 59.248
SRR8316898Complete white stage 3.181
SRR8316899Complete white stage 12.376
SRR8316903Complete white stage 4.265
SRR8316902Silver flowering stage1.038
SRR8316904Silver flowering stage2.490
SRR8316905Silver flowering stage0.625
SRR8316906Gold flowering stage 1.359
SRR8316907Gold flowering stage 2.166
SRR8316908Gold flowering stage 1.051
SRP132670SRR6706286Control25.972
SRR6706287Light intensity 50%26.545
SRR6706288Light intensity 20%26.138
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.896
CNS0095593Slightly white alabastrum(diploid) 236.837
CNS0095594Slightly white alabastrum(diploid) 350.043
CNS0095595Whole white alabastrum(diploid) 235.369
CNS0095596Whole white alabastrum(diploid) 346.648
CNS0095597Whole white alabastrum(diploid) 428.116
CNS0095598Silvery flower (diploied) 111.590
CNS0095599Silvery flower (diploied) 210.397
CNS0095600Silvery flower (diploied) 36.929
CNS0095601Golden flower (diploid) 17.921
CNS0095602Golden flower (diploid) 27.077
CNS0095603Golden flower (diploid) 36.812
CNS0095604Slightly white alabastrum(tetraploid) 168.324
CNS0095605Slightly white alabastrum(tetraploid) 263.784
CNS0095606Slightly white alabastrum(tetraploid) 330.432
CNS0095607Whole white alabastrum(tetraploid) 143.285
CNS0095608Whole white alabastrum(tetraploid) 230.088
CNS0095609Whole white alabastrum(tetraploid) 344.873
CNS0095610Silvery flower (tetraploid) 11.660
CNS0095611Silvery flower (tetraploid) 23.186
CNS0095612Silvery flower (tetraploid) 32.241
CNS0095613Golden flower (tetraploid) 10.358
CNS0095614Golden flower (tetraploid) 20.966
CNS0095615Golden flower (tetraploid) 30.495
CRA001975CRR073297Stem 164.424
CRR073298Stem 257.804
CRR073299Stem 375.551
CRR073300Leaf 138.786
CRR073301Leaf 250.738
CRR073302Leaf 369.015
CRR073303Juvenile bud 142.813
CRR073304Juvenile bud 224.961
CRR073305Juvenile bud 333.085
CRR073306Third green 12.077
CRR073307Third green 24.276
CRR073308Third green 33.561
CRR073309Second white 14.079
CRR073310Second white 21.813
CRR073311Second white 31.212
CRR073312Silver flowering 11.260
CRR073313Silver flowering 22.243
CRR073314Silver flowering 31.896
CRR073315Gold flowering 112.434
CRR073316Gold flowering 29.454
CRR073317Gold flowering 39.319
CRR073318Tawny withering 123.914
CRR073319Tawny withering 220.833
CRR073320Tawny withering 325.516