Gene detail

Detail information of GWHGAAZE021841

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006378320.1	1.4748E-151	hypothetical protein POPTR_0010s07790g [Populus trichocarpa]
COG	YP_822290.1	0.000000003	RNP-1 like RNA-binding protein
Swissprot	tr\|Q8W034\|RNP1_ARATH	2E-106	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|U5G3V3\|U5G3V3_POPTR	6E-152	Uncharacterized protein {ECO:0000313\|EMBL:ERP56117.1}
TAIR10	AT4G14300.1	2E-78	RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	62298513	62300896	+
GWHAAZE00000006	mRNA	62298513	62300896	+
GWHAAZE00000006	exon	62298513	62298880	+
GWHAAZE00000006	exon	62298976	62298991	+
GWHAAZE00000006	exon	62299853	62300896	+
GWHAAZE00000006	CDS	62298513	62298880	+
GWHAAZE00000006	CDS	62298976	62298991	+
GWHAAZE00000006	CDS	62299853	62300896	+

Transcript Sequence
>GWHTAAZE021867 ATCAGAGACTATCTGTCCATCTTGACCTCTTTCTCTCTTCCCAAACCCCAGTCGGCGTTTTCGCTACGAACCCTCACTCTCTCTCACACACATTCCTCTCCAAATCTCTATTCTCTCCCTTCAATTCAATCTAGAGAGATAAAATATATGGATTCAGATCAAGGAAAGCTTTTCATTGGCGGAATCTCCTGGGAGACGTCGGAGGAAAAGCTGAAGGAGTATTTTGGCAACTATGGTGATGTTTTACAGGCCGTTGTTATGAGGGACAAGCTTACTGGTAAACCTAGAGGCTTTGGTTTCGTTGTTTTGCAGATCCTTCGGTCCTCGATACTGTTCTTCAGGATAAACACATCATTGACGGTCGAACGGGTTATTCATCGTTTTGTTGATGCTAAGAGGGCCCTATCAAGAGAGGAACAACAGGTTTCAAAAGCTGGAAATCCTAATGCTGGTAGAAACTTTGGAGGAGGTGGTGGTGGTGGTGGAAATATCAAGACTAAGAAGATTTTTGTTGGCGGATTGCCTCCCACACTGACCGAGGAAGGGTTTCAACAGTATTTTGAAGCTTACGGACATGTAACTGATGTAGTGGTCATGTATGACCAGCAAACCAACCGCCCCCGTGGATTTGGATTTGTTTCCTTTGATTCTGAAGATGCAGTTGACAGGGTTTTACACAAGACCTTCCATGATTTAGATGGCAAGCAAGTGGAAGTTAAACGGGCTCTTCCTAAAGATGCCAACCCTGGTGGAGGTGGCCGTGGCAGCGGTGGTTATGGTGGCAATTCAGGTTCTTATGAAGGCCGGATGGATTCAAATAGGTACATGCAGTCTCAGAATACTGGAGGTGGGTTTCCGCCGTATGGTTCTGCTGGGTATGGTACAGCAGGTTACGGCTATGGTTCTGCTAATAGTGCCATGTATGGTGGCTACGGCGGTTATGGTGGTGCAGCTGGTGCGGCCTATGGTAACACTAGTGTCCCAAATACTGGTTATGGAAGTGCCCCACAAGGTGCACCTAGAAGTTCATGGAACAATCAGGCTTCCTCTGGTTATGGTGCTGTTGGATATGGGAATGCTCCTGTTTCAGCCCCTACAGGTCAATCTCCGTCAGCTGGGTATGGGAACCAAGGTTACGGGTATGGTGGATATGGTGGAAGTGATGGGTCTTATGGTAATCCAGCTGCGTATGGTGCTGTTGGAGGACGTATTGGGAGTGCCCCTAATAGCAATTCTTCTGCCGCTGGTGGGGGAGAGCTACAATCGAGTGGTGGGGGATACATGGGAGGTAGCTACGGTGATGCCAATCAAGGGTGGAGATCTGACCCATCACAAGCTTCTGTGAACTATGGGGCTCAGGCTGGTGGGCATGTTGGATATGGTGGCGGGTATGGTGGTGCTCCTGCCCGACAGGCTCAGCAGCAGTGA

Network for GWHGAAZE021841

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	57	102	1.50E-11
PF00076.23	RRM_1	169	226	1.60E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14411	MSI	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	91.798
	SRR3591706	second leaf	75.137
	SRR3591707	mature leaf	56.452
	SRR3591708	Shoot apex	115.689
	SRR3591709	Stem	83.428
	SRR3591710	White floral bud	83.695
	SRR3591711	White flower	100.017
	SRR3591712	Green floral bud	105.661
	SRR3591713	Yellow flower	67.285
SRP173429	SRR8316895	Juvenile bud stage	42.045
	SRR8316896	Juvenile bud stage	55.443
	SRR8316897	Juvenile bud stage	23.584
	SRR8316894	Third green stage	25.849
	SRR8316900	Third green stage	54.579
	SRR8316901	Third green stage	65.308
	SRR8316898	Complete white stage	23.022
	SRR8316899	Complete white stage	77.215
	SRR8316903	Complete white stage	45.850
	SRR8316902	Silver flowering stage	30.163
	SRR8316904	Silver flowering stage	32.462
	SRR8316905	Silver flowering stage	15.947
	SRR8316906	Gold flowering stage	46.433
	SRR8316907	Gold flowering stage	51.639
	SRR8316908	Gold flowering stage	53.973
SRP132670	SRR6706286	Control	76.028
	SRR6706287	Light intensity 50%	91.455
	SRR6706288	Light intensity 20%	99.512
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.339
	CNS0095593	Slightly white alabastrum(diploid) 2	55.353
	CNS0095594	Slightly white alabastrum(diploid) 3	48.476
	CNS0095595	Whole white alabastrum(diploid) 2	38.855
	CNS0095596	Whole white alabastrum(diploid) 3	31.361
	CNS0095597	Whole white alabastrum(diploid) 4	30.574
	CNS0095598	Silvery flower (diploied) 1	37.396
	CNS0095599	Silvery flower (diploied) 2	35.391
	CNS0095600	Silvery flower (diploied) 3	58.716
	CNS0095601	Golden flower (diploid) 1	26.441
	CNS0095602	Golden flower (diploid) 2	46.534
	CNS0095603	Golden flower (diploid) 3	43.420
	CNS0095604	Slightly white alabastrum(tetraploid) 1	64.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	57.864
	CNS0095606	Slightly white alabastrum(tetraploid) 3	142.587
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.416
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.337
	CNS0095609	Whole white alabastrum(tetraploid) 3	79.544
	CNS0095610	Silvery flower (tetraploid) 1	78.865
	CNS0095611	Silvery flower (tetraploid) 2	49.386
	CNS0095612	Silvery flower (tetraploid) 3	51.246
	CNS0095613	Golden flower (tetraploid) 1	36.529
	CNS0095614	Golden flower (tetraploid) 2	57.522
	CNS0095615	Golden flower (tetraploid) 3	50.337
CRA001975	CRR073297	Stem 1	52.998
	CRR073298	Stem 2	53.649
	CRR073299	Stem 3	59.695
	CRR073300	Leaf 1	53.192
	CRR073301	Leaf 2	47.062
	CRR073302	Leaf 3	49.608
	CRR073303	Juvenile bud 1	38.822
	CRR073304	Juvenile bud 2	45.707
	CRR073305	Juvenile bud 3	57.404
	CRR073306	Third green 1	40.117
	CRR073307	Third green 2	41.407
	CRR073308	Third green 3	39.441
	CRR073309	Second white 1	47.113
	CRR073310	Second white 2	37.077
	CRR073311	Second white 3	30.727
	CRR073312	Silver flowering 1	34.992
	CRR073313	Silver flowering 2	42.445
	CRR073314	Silver flowering 3	29.283
	CRR073315	Gold flowering 1	46.907
	CRR073316	Gold flowering 2	58.562
	CRR073317	Gold flowering 3	53.244
	CRR073318	Tawny withering 1	56.140
	CRR073319	Tawny withering 2	57.784
	CRR073320	Tawny withering 3	57.146